Error(s) in re-building vignettes:
  ...
--- re-building ‘sad_pkpd.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Joining, by = "ID"
Warning: position_dodge requires non-overlapping x intervals
Warning: position_dodge requires non-overlapping x intervals
`geom_smooth()` using formula 'y ~ x'
`geom_smooth()` using formula 'y ~ x'
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 172 row(s) containing missing values (geom_path).
Warning: Removed 468 rows containing missing values (geom_point).
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
Warning: Ignoring unknown parameters: shape
`geom_smooth()` using method = 'loess' and formula 'y ~ x'
`geom_smooth()` using method = 'loess' and formula 'y ~ x'
--- finished re-building ‘sad_pkpd.Rmd’

--- re-building ‘theoph.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Warning: Transformation introduced infinite values in continuous y-axis
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Transformation introduced infinite values in continuous y-axis
Quitting from lines 131-142 (theoph.Rmd) 
Error: processing vignette 'theoph.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘theoph.Rmd’

--- re-building ‘xgxr_overview.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

removing  points with MDV==1 & EVID==0 from dataset
--- finished re-building ‘xgxr_overview.Rmd’

SUMMARY: processing the following file failed:
  ‘theoph.Rmd’

Error: Vignette re-building failed.
Execution halted