Error(s) in re-building vignettes:
  ...
--- re-building ‘mpMap2.Rnw’ using Sweave
Warning in mpcross(founders = founders, finals = finals, pedigree = pedigreeSF,  :
  Removing data for 1 markers, because these markers have NA founder alleles
Error in validObject(.Object) : 
  invalid class “geneticData” object: 1: Coding error for marker D1M3: Founder allele 10 was not present in @hetData[[3]]
invalid class “geneticData” object: 2: Coding error for marker D1M4: Founder allele 2 was not present in @hetData[[4]]
invalid class “geneticData” object: 3: Coding error for marker D1M4: Founder allele 3 was not present in @hetData[[4]]
invalid class “geneticData” object: 4: Coding error for marker D1M4: Founder allele 4 was not present in @hetData[[4]]
invalid class “geneticData” object: 5: Coding error for marker D1M5: Founder allele 1 was not present in @hetData[[5]]
invalid class “geneticData” object: 6: Omitting details of further coding errors

Warning: stack imbalance in 'lazyLoadDBfetch', 33 then 39

 *** caught segfault ***
address 4, cause 'memory not mapped'

Traceback:
 1: close(object$output)
 2: driver$finish(drobj, error = TRUE)
 3: utils::Sweave(...)
 4: engine$weave(file, quiet = quiet, encoding = enc)
 5: doTryCatch(return(expr), name, parentenv, handler)
 6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
 7: tryCatchList(expr, classes, parentenv, handlers)
 8: tryCatch({    engine$weave(file, quiet = quiet, encoding = enc)    setwd(startdir)    output <- find_vignette_product(name, by = "weave", engine = engine)    if (!have.makefile && vignette_is_tex(output)) {        texi2pdf(file = output, clean = FALSE, quiet = quiet)        output <- find_vignette_product(name, by = "texi2pdf",             engine = engine)    }    outputs <- c(outputs, output)}, error = function(e) {    thisOK <<- FALSE    fails <<- c(fails, file)    message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",         file, conditionMessage(e)))})
 9: tools:::buildVignettes(dir = "/home/ripley/R/packages/tests-devel/mpMap2.Rcheck/vign_test/mpMap2",     ser_elibs = "/tmp/RtmpLzaGEP/file52f47f46d88.rds")
An irrecoverable exception occurred. R is aborting now ...