Error in re-building vignettes:
  ...

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Joining, by = "ID"
Warning: position_dodge requires non-overlapping x intervals
Warning: position_dodge requires non-overlapping x intervals
`geom_smooth()` using formula 'y ~ x'
`geom_smooth()` using formula 'y ~ x'
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning: Removed 468 rows containing non-finite values (stat_summary).
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning in self$trans$transform(x) : NaNs produced
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 172 row(s) containing missing values (geom_path).
Warning: Removed 468 rows containing missing values (geom_point).
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust
the group aesthetic?
Warning: Ignoring unknown parameters: shape
`geom_smooth()` using method = 'loess' and formula 'y ~ x'
`geom_smooth()` using method = 'loess' and formula 'y ~ x'
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Transformation introduced infinite values in continuous y-axis
Quitting from lines 131-142 (theoph.Rmd) 
Error: processing vignette 'theoph.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
Execution halted