Running ‘testthat.R’ [14s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(genBart)
  Welcome to genBart! To get started, it is recommended to walk 
  through the vignette. It can be accessed through browseVignettes("genBart").
  > 
  > test_check("genBart")
  ── 1. Error: genModelResults outputs correctly for one comparison (@test_genMode
  please use 'assay(x, withDimnames=FALSE)) <- value' or 'assays(x,
    withDimnames=FALSE)) <- value' when the dimnames on the supplied
    assay(s) are not identical to the dimnames on DESeqDataSet object 'x'
  Backtrace:
   1. DESeq2::DESeq(dds)
   3. DESeq2::estimateDispersions(...)
   4. DESeq2:::.local(object, ...)
   5. DESeq2::estimateDispersionsGeneEst(...)
   7. SummarizedExperiment::`assays<-`(`*tmp*`, value = `*vtmp*`)
  
  ── 2. Error: genModelResults outputs correctly for multiple comparisons (@test_g
  please use 'assay(x, withDimnames=FALSE)) <- value' or 'assays(x,
    withDimnames=FALSE)) <- value' when the dimnames on the supplied
    assay(s) are not identical to the dimnames on DESeqDataSet object 'x'
  Backtrace:
   1. DESeq2::DESeq(dds)
   3. DESeq2::estimateDispersions(...)
   4. DESeq2:::.local(object, ...)
   5. DESeq2::estimateDispersionsGeneEst(...)
   7. SummarizedExperiment::`assays<-`(`*tmp*`, value = `*vtmp*`)
  
  [1] "clustering genes from all samples normalized to mean..."
  [1] "clustering genes from all samples normalized to mean..."
  [1] "clustering genes from all samples normalized to controls..."
  [1] "clustering genes from baseline samples normalized to mean..."
  [1] "clustering genes from all samples normalized to mean..."
  [1] "clustering genes from all samples normalized to baseline..."
  [1] "clustering genes from baseline samples normalized to mean..."
  [1] "clustering genes from baseline samples normalized to controls..."
  [1] "clustering genes from all samples normalized to mean..."
  [1] "clustering genes from all samples normalized to controls..."
  [1] "clustering genes from all samples normalized to baseline..."
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 134 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 2 ]
  1. Error: genModelResults outputs correctly for one comparison (@test_genModelResults.R#65) 
  2. Error: genModelResults outputs correctly for multiple comparisons (@test_genModelResults.R#86) 
  
  Error: testthat unit tests failed
  Execution halted