Error(s) in re-building vignettes:
--- re-building ‘AC_Liouville.Rmd’ using rmarkdown
Loading required package: copula
--- finished re-building ‘AC_Liouville.Rmd’

--- re-building ‘AR_Clayton.Rmd’ using rmarkdown
Loading required package: copula
--- finished re-building ‘AR_Clayton.Rmd’

sh: line 1: 40949 Segmentation fault      (core dumped) '/data/gannet/ripley/R/R-devel/bin/R' --vanilla --no-echo > '/tmp/Rtmpo3DFPL/working_dir/RtmpNBMeXJ/file97dddb6675d' 2>&1 < '/tmp/Rtmpo3DFPL/working_dir/RtmpNBMeXJ/file97dd5472b313'
--- re-building ‘GIG.Rmd’ using rmarkdown
Loading required package: tools
Loading required namespace: Runuran
Loading required package: copula
Loading required package: bbmle
Loading required package: stats4
Loading required package: lattice
Loading required package: grid

 *** caught segfault ***
address 0x3620, cause 'memory not mapped'

Traceback:
 1: dev.off(dv)
 2: block_exec(params)
 3: call_block(x)
 4: process_group.block(group)
 5: process_group(group)
 6: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) {        setwd(wd)        cat(res, sep = "\n", file = output %n% "")        message("Quitting from lines ", paste(current_lines(i),             collapse = "-"), " (", knit_concord$get("infile"),             ") ")    })
 7: process_file(text, output)
 8: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
 9: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),     output_dir = getwd(), ...)
10: vweave_rmarkdown(...)
11: engine$weave(file, quiet = quiet, encoding = enc)
12: doTryCatch(return(expr), name, parentenv, handler)
13: tryCatchOne(expr, names, parentenv, handlers[[1L]])
14: tryCatchList(expr, classes, parentenv, handlers)
15: tryCatch({    engine$weave(file, quiet = quiet, encoding = enc)    setwd(startdir)    output <- find_vignette_product(name, by = "weave", engine = engine)    if (!have.makefile && vignette_is_tex(output)) {        texi2pdf(file = output, clean = FALSE, quiet = quiet)        output <- find_vignette_product(name, by = "texi2pdf",             engine = engine)    }}, error = function(e) {    OK <<- FALSE    message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",         file, conditionMessage(e)))})
16: tools:::.buildOneVignette("GIG.Rmd", "/data/gannet/ripley/R/packages/tests-devel/copula.Rcheck/vign_test/copula",     TRUE, FALSE, "GIG", "UTF-8", "/tmp/Rtmpo3DFPL/working_dir/RtmpNBMeXJ/file97dd57253fba.rds")
An irrecoverable exception occurred. R is aborting now ...
--- re-building ‘HAXC.Rmd’ using rmarkdown
--- finished re-building ‘HAXC.Rmd’

--- re-building ‘NALC.Rmd’ using rmarkdown
Loading required package: gsl
Loading required package: copula

Attaching package: 'copula'

The following objects are masked from 'package:gsl':

    psi, sinc

--- finished re-building ‘NALC.Rmd’

--- re-building ‘copula_GARCH.Rmd’ using rmarkdown
Loading required package: copula
Loading required package: rugarch
Loading required package: parallel

Attaching package: 'rugarch'

The following object is masked from 'package:stats':

    sigma

--- finished re-building ‘copula_GARCH.Rmd’

--- re-building ‘dNAC.Rmd’ using rmarkdown
Loading required package: copula
Loading required package: grid
Loading required package: lattice
--- finished re-building ‘dNAC.Rmd’

--- re-building ‘empiricial_copulas.Rmd’ using rmarkdown
--- finished re-building ‘empiricial_copulas.Rmd’

--- re-building ‘logL_visualization.Rmd’ using rmarkdown
Loading required package: copula
--- finished re-building ‘logL_visualization.Rmd’

--- re-building ‘qrng.Rmd’ using rmarkdown
Loading required package: stats4
Loading required package: splines

Attaching package: 'VGAM'

The following objects are masked from 'package:copula':

    log1mexp, log1pexp, rlog

Loading required package: rngWELL
This is randtoolbox. For an overview, type 'help("randtoolbox")'.

Attaching package: 'randtoolbox'

The following object is masked from 'package:qrng':

    sobol

--- finished re-building ‘qrng.Rmd’

--- re-building ‘wild_animals.Rmd’ using rmarkdown
--- finished re-building ‘wild_animals.Rmd’

--- re-building ‘Frank-Rmpfr.Rnw’ using Sweave
Loading required package: copula
Loading required package: Rmpfr
Loading required package: gmp

Attaching package: 'gmp'

The following objects are masked from 'package:copula':

    Eulerian, Eulerian.all, Stirling1, Stirling1.all, Stirling2,
    Stirling2.all

The following objects are masked from 'package:base':

    %*%, apply, crossprod, matrix, tcrossprod

C code of R package 'Rmpfr': GMP using 64 bits per limb


Attaching package: 'Rmpfr'

The following object is masked from 'package:gmp':

    outer

The following object is masked from 'package:copula':

    Bernoulli

The following objects are masked from 'package:stats':

    dbinom, dgamma, dnorm, dpois, pnorm

The following objects are masked from 'package:base':

    cbind, pmax, pmin, rbind

--- finished re-building ‘Frank-Rmpfr.Rnw’

--- re-building ‘nacopula-pkg.Rnw’ using Sweave
Loading required package: copula
Loading required package: lattice
Warning: 'pnacopula' is deprecated.
Use 'pCopula' instead.
See help("Deprecated")
Warning: 'pnacopula' is deprecated.
Use 'pCopula' instead.
See help("Deprecated")
Warning: 'pnacopula' is deprecated.
Use 'pCopula' instead.
See help("Deprecated")
Warning: 'pnacopula' is deprecated.
Use 'pCopula' instead.
See help("Deprecated")
--- finished re-building ‘nacopula-pkg.Rnw’

--- re-building ‘rhoAMH-dilog.Rnw’ using Sweave
Loading required package: copula
Loading required package: sfsmisc
Warning in xy.coords(x, y, xlabel, ylabel, log) :
  190 y values <= 0 omitted from logarithmic plot
Warning in xy.coords(x, y, xlabel, ylabel, log = log, recycle = TRUE) :
  2364 y values <= 0 omitted from logarithmic plot
Warning in xy.coords(x, y, xlabel, ylabel, log = log, recycle = TRUE) :
  1509 y values <= 0 omitted from logarithmic plot
Warning in xy.coords(x, y, xlabel, ylabel, log) :
  36 y values <= 0 omitted from logarithmic plot
Warning in xy.coords(x, y, xlabel, ylabel, log = log, recycle = TRUE) :
  2364 y values <= 0 omitted from logarithmic plot
Warning in xy.coords(x, y, xlabel, ylabel, log = log, recycle = TRUE) :
  6323 y values <= 0 omitted from logarithmic plot
Warning in xy.coords(x, y, xlabel, ylabel, log = log, recycle = TRUE) :
  7933 y values <= 0 omitted from logarithmic plot
Warning in xy.coords(x, y, xlabel, ylabel, log = log, recycle = TRUE) :
  24289 y values <= 0 omitted from logarithmic plot
Warning in xy.coords(x, y, xlabel, ylabel, log) :
  148 y values <= 0 omitted from logarithmic plot
Warning in xy.coords(x, y, xlabel, ylabel, log = log, recycle = TRUE) :
  2364 y values <= 0 omitted from logarithmic plot
Warning in xy.coords(x, y, xlabel, ylabel, log = log, recycle = TRUE) :
  6323 y values <= 0 omitted from logarithmic plot
--- finished re-building ‘rhoAMH-dilog.Rnw’

SUMMARY: processing the following file failed:
  ‘GIG.Rmd’

Error: Vignette re-building failed.
Execution halted