Running ‘AAAtest-all.R’ [171s/540s]
Running the tests in ‘tests/AAAtest-all.R’ failed.
Complete output:
  > if(require("testthat")) {
  +     pkg <- "glmmTMB"
  +     require(pkg, character.only=TRUE)
  +     print(sessionInfo())
  +     test_check(pkg, reporter="summary")
  +     print(warnings()) # TODO? catch most of these by expect_warning(..)
  + } else {
  +     warnings("Package 'testthat' not available, cannot run unit tests for package",
  + 	     sQuote(pkg))
  + }
  Loading required package: testthat
  Loading required package: glmmTMB
  R Under development (unstable) (2020-01-21 r77682)
  Platform: x86_64-pc-linux-gnu (64-bit)
  Running under: Fedora 30 (Workstation Edition)
  
  Matrix products: default
  BLAS:   /data/gannet/ripley/R/R-clang/lib/libRblas.so
  LAPACK: /data/gannet/ripley/R/R-clang/lib/libRlapack.so
  
  locale:
   [1] LC_CTYPE=en_GB.utf8        LC_NUMERIC=C              
   [3] LC_TIME=en_GB.UTF-8        LC_COLLATE=C              
   [5] LC_MONETARY=en_GB.UTF-8    LC_MESSAGES=en_GB.UTF-8   
   [7] LC_PAPER=en_GB.UTF-8       LC_NAME=C                 
   [9] LC_ADDRESS=C               LC_TELEPHONE=C            
  [11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C       
  
  attached base packages:
  [1] stats     graphics  grDevices utils     datasets  methods   base     
  
  other attached packages:
  [1] glmmTMB_0.2.3  testthat_2.3.1
  
  loaded via a namespace (and not attached):
   [1] Rcpp_1.0.3      lattice_0.20-38 MASS_7.3-51.5   grid_4.0.0     
   [5] R6_2.4.1        nlme_3.1-143    magrittr_1.5    rlang_0.4.2    
   [9] minqa_1.2.4     nloptr_1.2.1    Matrix_1.2-18   boot_1.3-24    
  [13] splines_4.0.0   lme4_1.1-21     TMB_1.7.16      compiler_4.0.0 
  VarCorr: .........1
  Very basic glmmTMB fitting: .................................
  trickier examples: ..............
  glmmTMBControl: ..
  Testing dispersion: ..
  emmeans: ...
  car::Anova: ..
  effects: .W.
  test edge cases: .
  basic examples: ...
  alternative binomial specifications: ..........
  fitting exotic families: ..............................
  trunc compois: ...
  compois: ...
  genpois: ..
  tweedie: .....
  link function info available: ............
  link info added to family: ...
  formula parsing: ................
  basic methods: ........................WW.................................
  simulate consistency with glm/lm: ...
  Ranef etc.: .......
  refit: ...
  offsets: ..........
  Predicting new levels: .
  Catch invalid predictions: ...
  Predict two-column response case: .
  Prediction with dispformula=~0: .
  Handling NA values in predictions: ....W.W..
  prediction with different binomial specs: ..
  zero-inflation prediction: .....
  deprecated zitype parameter: .
  complex bases: ........
  REML: ......
  Saving and loading glmmTMB objects: .
  ..variance structures: ..............
  weight: ....
  ZI models: ..
  
  ══ Warnings ════════════════════════════════════════════════════════════════════
  1. (unknown) (@test-downstream.R#49) - overriding variance function for effects: computed variances may be incorrect
  
  2. terms (@test-methods.R#137) - Model convergence problem; non-positive-definite Hessian matrix. See vignette('troubleshooting')
  
  3. terms (@test-methods.R#137) - Model convergence problem; function evaluation limit reached without convergence (9). See vignette('troubleshooting')
  
  4. (unknown) (@test-predict.R#75) - `failure_message` is missing, with no default.
  
  5. (unknown) (@test-predict.R#77) - `failure_message` is missing, with no default.
  
  ══ Failed ══════════════════════════════════════════════════════════════════════
  ── 1. Failure: (unknown) (@test-VarCorr.R#167)  ────────────────────────────────
  `c3` not equal to structure(...).
  Component "V3": Mean relative difference: 1.444528e-05
  
  ══ DONE ════════════════════════════════════════════════════════════════════════
  Error: Test failures
  Execution halted