Running 'test-all.R' [16s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > library(testthat)
  > test_check("treeman")
  Loading required package: treeman
  [4] in treelst is not a TreeMan object
  These nodes are invalid:
  n1, n9, t3
   
  These nodes are invalid:
  n1
   
  Root node `x` not in ndlst
   
  These nodes are invalid:
  n9
   
  These nodes are invalid:
  n7, n9
   
  Formal class 'TreeMan' [package "treeman"] with 17 slots
    ..@ ndlst       :List of 19
    ..@ nds         : chr [1:9] "n1" "n2" "n3" "n4" ...
    ..@ nnds        : int 9
    ..@ tips        : chr [1:10] "t1" "t10" "t2" "t3" ...
    ..@ ntips       : int 10
    ..@ all         : chr [1:19] "n1" "n2" "n3" "n4" ...
    ..@ nall        : int 19
    ..@ pd          : num 8.66
    ..@ wspn        : logi TRUE
    ..@ wtxnyms     : logi FALSE
    ..@ ply         : logi FALSE
    ..@ updtd       : logi TRUE
    ..@ ndmtrx      :Formal class 'big.matrix' [package "bigmemory"] with 1 slot
    ..@ tinds       : int [1:10] 10 11 12 13 14 15 16 17 18 19
    ..@ prinds      : num [1:19] 1 1 2 1 4 5 6 6 7 3 ...
    ..@ root        : chr "n1"
    ..@ othr_slt_nms: logi(0) 
  [1] "TreeMan Object of [10] tips"
  Tree (TreeMan Object):
    + 10 tips
    + 9 internal nodes
    + With node matrix
    + Binary
    + PD 10.2
    + Root node is "n1"
  -- 1. Error: rmNodes() works (@test-manip-methods.R#110)  ----------------------
  memory could not be allocated for instance of type big.matrix
  Backtrace:
   1. treeman::rmNodes(tree, nids)
   3. bigmemory::as.big.matrix(tree@ndmtrx[bool, bool])
   4. bigmemory::big.matrix(...)
  
  -- 2. Error: rmClade() works (@test-manip-methods.R#151)  ----------------------
  memory could not be allocated for instance of type big.matrix
  Backtrace:
   1. treeman::rmClade(t2, sample(t2["nds"], 1))
   3. bigmemory::as.big.matrix(tree@ndmtrx[bool, bool])
   4. bigmemory::big.matrix(...)
  
  Node (root node):
    + ID: "n1"
    + ptid: "n2", "n3"
    + nkids: 10
    + predist: 0
    + pd: 12
  -- 3. Error: loadTreeMan() works (@test-rw-methods.R#131)  ---------------------
  memory could not be allocated for instance of type big.matrix
  Backtrace:
   1. treeman::loadTreeMan(file = "test.RData")
   3. bigmemory::read.big.matrix(...)
   4. bigmemory::big.matrix(...)
  
  Tree (TreeMan Object):
    + 10 tips
    + 9 internal nodes
    + Binary
    + PD 9.27
    + Root node is "n1"
    + With additional node slots:
      [binary_val]
  Tree (TreeMan Object):
    + 10 tips
    + 9 internal nodes
    + Binary
    + PD 7.88
    + Root node is "n1"
  [1] "TreeMen Object of [3] trees"
  TreeMen Object of [3] trees== testthat results  ===========================================================
  [ OK: 241 | SKIPPED: 7 | WARNINGS: 2 | FAILED: 3 ]
  1. Error: rmNodes() works (@test-manip-methods.R#110) 
  2. Error: rmClade() works (@test-manip-methods.R#151) 
  3. Error: loadTreeMan() works (@test-rw-methods.R#131) 
  
  Error: testthat unit tests failed
  Execution halted