Error(s) in re-building vignettes:
--- re-building 'chondro.pdf.asis' using asis
--- finished re-building 'chondro.pdf.asis'

--- re-building 'fileio.pdf.asis' using asis
--- finished re-building 'fileio.pdf.asis'

--- re-building 'baseline.Rnw' using Sweave
Loading required package: lattice
Loading required package: grid
Loading required package: ggplot2
Package hyperSpec, version 0.99-20180627

To get started, try
   vignette ("hyperspec")
   package?hyperSpec 
   vignette (package = "hyperSpec")

If you use this package please cite it appropriately.
   citation("hyperSpec")
will give you the correct reference.

The project homepage is http://hyperspec.r-forge.r-project.org


start: 300 support points
Iteration 1: 146 support points
Iteration 2: 85 support points
Iteration 3: 44 support points
Iteration 4: 26 support points
Iteration 5: 12 support points
Iteration 6: 7 support points
Iteration 7: 2 support points
Warning in max(x@wavelength) :
  no non-missing arguments to max; returning -Inf
Warning in min(x@wavelength) :
  no non-missing arguments to min; returning Inf
Warning in max(x@wavelength) :
  no non-missing arguments to max; returning -Inf
Warning in min(x@wavelength) :
  no non-missing arguments to min; returning Inf
Iteration 8: 0 support points
spectrum      1:     2 support points, noise = 0.0,   8 iterations
Fitting with npts.min = 15

start: 300 support points
spectrum      1:    20 support points, noise = 0.0,   5 iterations
Fitting with npts.min = 15

start: 300 support points
spectrum      1:    26 support points, noise = 0.0,   5 iterations
Fitting with npts.min = 15

start: 300 support points
spectrum      1:    25 support points, noise = 0.0,   5 iterations
Fitting with npts.min = 5

start: 100 support points
spectrum      1:    99 support points, noise = 4.0,   2 iterations
Fitting with npts.min = 15

start: 300 support points
Iteration 1: 153 support points
Iteration 2: 93 support points
Iteration 3: 54 support points
Iteration 4: 38 support points
Iteration 5: 32 support points
Iteration 6: 29 support points
Iteration 7: 29 support points
spectrum      1:    29 support points, noise = 15.0,   7 iterations
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"D:\compiler\texmf\miktex\bin\texify.exe" --quiet --pdf "baseline.tex" --max-iterations=20 -I "D:/RCompile/recent/R/share/texmf/tex/latex" -I "D:/RCompile/recent/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'baseline.Rnw' failed with diagnostics:
running 'texi2dvi' on 'baseline.tex' failed

LaTeX errors:
baseline.bbl:9: Package inputenc Error: Keyboard character used is undefined
(inputenc)                in inputencoding `utf8'.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help
baseline.bbl:9: Package inputenc Error: Keyboard character used is undefined
(inputenc)                in inputencoding `utf8'.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help

--- failed re-building 'baseline.Rnw'

--- re-building 'flu.Rnw' using Sweave
Loading required package: lattice
Loading required package: grid
Loading required package: ggplot2
Package hyperSpec, version 0.99-20180627

To get started, try
   vignette ("hyperspec")
   package?hyperSpec 
   vignette (package = "hyperSpec")

If you use this package please cite it appropriately.
   citation("hyperSpec")
will give you the correct reference.

The project homepage is http://hyperspec.r-forge.r-project.org


Read 362 items
Read 362 items
Read 362 items
Read 362 items
Read 362 items
Read 362 items
Warning in min(abs(diff(x@wavelength))) :
  no non-missing arguments to min; returning Inf
Warning in min(abs(diff(x@wavelength))) :
  no non-missing arguments to min; returning Inf
--- finished re-building 'flu.Rnw'

--- re-building 'hyperspec.Rnw' using Sweave
Loading required package: lattice
Loading required package: grid
Loading required package: ggplot2
Package hyperSpec, version 0.99-20180627

To get started, try
   vignette ("hyperspec")
   package?hyperSpec 
   vignette (package = "hyperSpec")

If you use this package please cite it appropriately.
   citation("hyperSpec")
will give you the correct reference.

The project homepage is http://hyperspec.r-forge.r-project.org


Loading required namespace: mvtnorm
Loading required package: MASS
Warning in predict.lda(lda, chondro) :
  variable names in 'newdata' do not match those in 'object'
Warning in rm(chondro) : object 'chondro' not found
Loading required package: baseline

Attaching package: 'baseline'

The following object is masked from 'package:stats':

    getCall

Warning in scores[, , 1:10] %*% loadings[1:10] :
  Dropping column(s) of y: filename, measurement
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"D:\compiler\texmf\miktex\bin\texify.exe" --quiet --pdf "hyperspec.tex" --max-iterations=20 -I "D:/RCompile/recent/R/share/texmf/tex/latex" -I "D:/RCompile/recent/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'hyperspec.Rnw' failed with diagnostics:
running 'texi2dvi' on 'hyperspec.tex' failed

LaTeX errors:
hyperspec.bbl:9: Package inputenc Error: Keyboard character used is undefined
(inputenc)                in inputencoding `utf8'.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help
hyperspec.bbl:9: Package inputenc Error: Keyboard character used is undefined
(inputenc)                in inputencoding `utf8'.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help

--- failed re-building 'hyperspec.Rnw'

--- re-building 'laser.Rnw' using Sweave
Loading required package: lattice
Loading required package: grid
Loading required package: ggplot2
Package hyperSpec, version 0.99-20180627

To get started, try
   vignette ("hyperspec")
   package?hyperSpec 
   vignette (package = "hyperSpec")

If you use this package please cite it appropriately.
   citation("hyperSpec")
will give you the correct reference.

The project homepage is http://hyperspec.r-forge.r-project.org


Loading required package: rgl
plot chunk
--- finished re-building 'laser.Rnw'

--- re-building 'plotting.Rnw' using Sweave
Loading required package: lattice
Loading required package: grid
Loading required package: ggplot2
Package hyperSpec, version 0.99-20180627

To get started, try
   vignette ("hyperspec")
   package?hyperSpec 
   vignette (package = "hyperSpec")

If you use this package please cite it appropriately.
   citation("hyperSpec")
will give you the correct reference.

The project homepage is http://hyperspec.r-forge.r-project.org


Warning in (function (object, model = spc ~ c, groups = NULL, func = NULL,  :
  Intensity at first wavelengh only is used.
Warning in hyperSpec:::.levelplot(x, data, ...) :
  Only first wavelength is used for plotting
Loading required namespace: deldir

     PLEASE NOTE:  The components "delsgs" and "summary" of the
 object returned by deldir() are now DATA FRAMES rather than
 matrices (as they were prior to release 0.0-18).
 See help("deldir").
 
     PLEASE NOTE: The process that deldir() uses for determining
 duplicated points has changed from that used in version
 0.0-9 of this package (and previously). See help("deldir").


Warning in plotc(x, ...) : Intensity at first wavelengh only is used.
Warning in (function (x, y, z, subscripts, at = pretty(z), ..., col.regions = regions$col,  :
  'x' values are not equispaced; output may be wrong
Warning in hyperSpec:::.levelplot(x, data, ...) :
  Only first wavelength is used for plotting
Loading required package: latticeExtra

Attaching package: 'latticeExtra'

The following object is masked from 'package:ggplot2':

    layer

Warning in (function (x, y, z, subscripts, at = pretty(z), ..., col.regions = regions$col,  :
  'x' values are not equispaced; output may be wrong
Warning in (function (x, y, z, subscripts, at = pretty(z), ..., col.regions = regions$col,  :
  'y' values are not equispaced; output may be wrong
Loading required package: rgl
Warning: Using `as.character()` on a quosure is deprecated as of rlang 0.3.0.
Please use `as_label()` or `as_name()` instead.
This warning is displayed once per session.
Warning: Ignoring unknown aesthetics: y
--- finished re-building 'plotting.Rnw'

SUMMARY: processing the following files failed:
  'baseline.Rnw' 'hyperspec.Rnw'

Error: Vignette re-building failed.
Execution halted