Running 'test-all.R' [125s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > library(testthat)
  > test_check("EpiModel")
  Loading required package: EpiModel
  Loading required package: deSolve
  Loading required package: networkDynamic
  Loading required package: network
  network: Classes for Relational Data
  Version 1.16.0 created on 2019-11-30.
  copyright (c) 2005, Carter T. Butts, University of California-Irvine
                      Mark S. Handcock, University of California -- Los Angeles
                      David R. Hunter, Penn State University
                      Martina Morris, University of Washington
                      Skye Bender-deMoll, University of Washington
   For citation information, type citation("network").
   Type help("network-package") to get started.
  
  
  networkDynamic: version 0.10.0, created on 2019-04-04
  Copyright (c) 2019, Carter T. Butts, University of California -- Irvine
                      Ayn Leslie-Cook, University of Washington
                      Pavel N. Krivitsky, University of Wollongong
                      Skye Bender-deMoll, University of Washington
                      with contributions from
                      Zack Almquist, University of California -- Irvine
                      David R. Hunter, Penn State University
                      Li Wang
                      Kirk Li, University of Washington
                      Steven M. Goodreau, University of Washington
                      Jeffrey Horner
                      Martina Morris, University of Washington
  Based on "statnet" project software (statnet.org).
  For license and citation information see statnet.org/attribution
  or type citation("networkDynamic").
  
  Loading required package: tergm
  Loading required package: ergm
  
  ergm: version 3.10.4, created on 2019-06-10
  Copyright (c) 2019, Mark S. Handcock, University of California -- Los Angeles
                      David R. Hunter, Penn State University
                      Carter T. Butts, University of California -- Irvine
                      Steven M. Goodreau, University of Washington
                      Pavel N. Krivitsky, University of Wollongong
                      Martina Morris, University of Washington
                      with contributions from
                      Li Wang
                      Kirk Li, University of Washington
                      Skye Bender-deMoll, University of Washington
                      Chad Klumb
  Based on "statnet" project software (statnet.org).
  For license and citation information see statnet.org/attribution
  or type citation("ergm").
  
  NOTE: Versions before 3.6.1 had a bug in the implementation of the bd()
  constriant which distorted the sampled distribution somewhat. In
  addition, Sampson's Monks datasets had mislabeled vertices. See the
  NEWS and the documentation for more details.
  
  NOTE: Some common term arguments pertaining to vertex attribute and
  level selection have changed in 3.10.0. See terms help for more
  details. Use 'options(ergm.term=list(version="3.9.4"))' to use old
  behavior.
  
  
  tergm: version 3.6.1, created on 2019-06-12
  Copyright (c) 2019, Pavel N. Krivitsky, University of Wollongong
                      Mark S. Handcock, University of California -- Los Angeles
                      with contributions from
                      David R. Hunter, Penn State University
                      Steven M. Goodreau, University of Washington
                      Martina Morris, University of Washington
                      Nicole Bohme Carnegie, New York University
                      Carter T. Butts, University of California -- Irvine
                      Ayn Leslie-Cook, University of Washington
                      Skye Bender-deMoll
                      Li Wang
                      Kirk Li, University of Washington
  Based on "statnet" project software (statnet.org).
  For license and citation information see statnet.org/attribution
  or type citation("tergm").
  
  
  EpiModel Summary
  =======================
  Model class: netsim
  
  Simulation Details
  -----------------------
  Model type: SI
  No. simulations: 1
  No. time steps: 25
  No. NW modes: 1
  
  Model Statistics
  ------------------------------
  Time: 25 
  ------------------------------ 
                  mean  sd  pct
  Suscept.           0   0  NaN
  Infect.            0   0  NaN
  Total              0   0    1
  S -> I             0   0   NA
  Arrival ->         0   0   NA
  S Departure ->     0   0   NA
  I Departure ->     0   0   NA
  ------------------------------ 
  
  Starting Network Simulation...
  Sim = 1/5
  Sim = 2/5
  Sim = 3/5
  Sim = 4/5
  Sim = 5/5
  Starting Network Simulation...
  Sim = 1/5
  Sim = 2/5
  Sim = 3/5
  Sim = 4/5
  Sim = 5/5EpiModel Network Diagnostics
  =======================
  Diagnostic Method: Dynamic
  Simulations: 1
  Time Steps per Sim: 10
  
  Formation Diagnostics
  ----------------------- 
        Target Sim Mean Pct Diff Sim SD
  edges     15     14.4       -4  1.075
  
  Dissolution Diagnostics
  ----------------------- 
                 Target Sim Mean Pct Diff Sim SD
  Edge Duration   20.00    5.000  -75.000     NA
  Pct Edges Diss   0.05    0.059   18.837  0.047
  EpiModel Network Diagnostics
  =======================
  Diagnostic Method: Dynamic
  Simulations: 2
  Time Steps per Sim: 10
  
  Formation Diagnostics
  ----------------------- 
        Target Sim Mean Pct Diff Sim SD
  edges     15     13.9   -7.333  1.651
  
  Dissolution Diagnostics
  ----------------------- 
                 Target Sim Mean Pct Diff Sim SD
  Edge Duration   20.00    4.500  -77.500  0.707
  Pct Edges Diss   0.05    0.059   18.588  0.058
  EpiModel Network Diagnostics
  =======================
  Diagnostic Method: Dynamic
  Simulations: 2
  Time Steps per Sim: 10
  
  Formation Diagnostics
  ----------------------- 
             Target Sim Mean Pct Diff Sim SD
  edges          15     8.05  -46.333  3.441
  concurrent     NA     2.10       NA  1.683
  
  Dissolution Diagnostics
  ----------------------- 
                 Target Sim Mean Pct Diff Sim SD
  Edge Duration   20.00     4.00  -80.000  4.243
  Pct Edges Diss   0.05     0.03  -39.767  0.057
  -- 1. Error: Edges only models (@test-netdx.R#41)  -----------------------------
  argument of length 0
  Backtrace:
   1. graphics::plot(dx3, type = "duration")
   2. EpiModel:::plot.netdx(dx3, type = "duration")
  
  
  Network Diagnostics
  -----------------------
  - Simulating 2 networks
    |**|
  - Calculating formation statistics
  - Calculating duration statistics
    |**|
  - Calculating dissolution statistics
    |**|
   sim.col must be either missing or a vector of length 1 or nstats ( )mean.col must be either missing or a vector of length 1 or nstats ( )targ.col must be either missing or a vector of length 1 or nstats ( )qnts.col must be either missing or a vector of length 1 or nstats ( )
  Network Diagnostics
  -----------------------
  - Simulating 1 network
  - Calculating formation statisticsEpiModel Network Diagnostics
  =======================
  Diagnostic Method: Dynamic
  Simulations: 2
  Time Steps per Sim: 50
  
  Formation Diagnostics
  ----------------------- 
                      Target Sim Mean Pct Diff Sim SD
  edges                   15    13.71     -8.6  2.783
  offset(mix.loc.0.1)     NA     0.00       NA  0.000
  
  Dissolution Diagnostics
  ----------------------- 
                 Target Sim Mean Pct Diff Sim SD
  Edge Duration  40.000   14.667  -63.333 11.882
  Pct Edges Diss  0.025    0.030   20.262  0.043
  EpiModel Network Diagnostics
  =======================
  Diagnostic Method: Dynamic
  Simulations: 2
  Time Steps per Sim: 50
  
  Formation Diagnostics
  ----------------------- 
                Target Sim Mean Pct Diff Sim SD
  edges             15   14.770   -1.533  2.933
  meandeg           NA    0.591       NA  0.117
  concurrent        NA    6.470       NA  2.311
  nodematch.loc     NA   14.770       NA  2.933
  
  Dissolution Diagnostics
  ----------------------- 
                 Target Sim Mean Pct Diff Sim SD
  Edge Duration  40.000   19.200   -52.00 11.085
  Pct Edges Diss  0.025    0.018   -26.42  0.039
  EpiModel Network Diagnostics
  =======================
  Diagnostic Method: Dynamic
  Simulations: 2
  Time Steps per Sim: 50
  
  Formation Diagnostics
  ----------------------- 
              Target Sim Mean Pct Diff Sim SD
  edges           15    11.37    -24.2  2.529
  mix.loc.0.1      0     0.00      NaN  0.000
  
  Dissolution Diagnostics
  ----------------------- 
                 Target Sim Mean Pct Diff Sim SD
  Edge Duration  40.000   12.077  -69.808 13.841
  Pct Edges Diss  0.025    0.020  -19.161  0.040
  
  Network Diagnostics
  -----------------------
  - Simulating 250 networks
  - Calculating formation statistics
  Starting Network Simulation...
  Sim = 1/1
  1/10	
  2/10	
  3/10	
  4/10	
  5/10	
  6/10	
  7/10	
  8/10	
  9/10	
  10/10	== testthat results  ===========================================================
  [ OK: 277 | SKIPPED: 76 | WARNINGS: 1 | FAILED: 1 ]
  1. Error: Edges only models (@test-netdx.R#41) 
  
  Error: testthat unit tests failed
  Execution halted