Running 'testthat.R' [76s/81s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(wsyn)
  
  Attaching package: 'wsyn'
  
  The following object is masked from 'package:stats':
  
      power
  
  > 
  > test_check("wsyn")
   ----------- FAILURE REPORT -------------- 
   --- failure: the condition has length > 1 ---
   --- srcref --- 
  : 
   --- package (from environment) --- 
  wsyn
   --- call from context --- 
  clust(dat, times, coords, "coh")
   --- call from argument --- 
  if (class(coords) != "data.frame") {
      stop("Error in clust: coords must be a data frame")
  }
   --- R stacktrace ---
  where 1: clust(dat, times, coords, "coh")
  where 2: eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  where 3: withCallingHandlers({
      code
      NULL
  }, error = function(cnd) {
      if (can_entrace(cnd)) {
          cnd <- cnd_entrace(cnd)
      }
      return_from(env, cnd)
  })
  where 4: .capture(act$val <- eval_bare(quo_get_expr(.quo), quo_get_env(.quo)), 
      ...)
  where 5: quasi_capture(enquo(object), label, capture_error, entrace = TRUE)
  where 6 at testthat/tests_clust.R#13: expect_error(clust(dat, times, coords, "coh"), "Error in clust: coords must be a data frame")
  where 7: eval(code, test_env)
  where 8: eval(code, test_env)
  where 9: withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error)
  where 10: doTryCatch(return(expr), name, parentenv, handler)
  where 11: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  where 12: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
  where 13: doTryCatch(return(expr), name, parentenv, handler)
  where 14: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), 
      names[nh], parentenv, handlers[[nh]])
  where 15: tryCatchList(expr, classes, parentenv, handlers)
  where 16: tryCatch(withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error), error = handle_fatal, 
      skip = function(e) {
      })
  where 17: test_code(desc, code, env = parent.frame())
  where 18 at testthat/tests_clust.R#3: test_that("test error checking", {
      dat <- matrix(rnorm(300), 10, 30)
      times <- 1:30
      dat <- cleandat(dat, times, 2)$cdat
      coords <- data.frame(X = 1:10, Y = 11:20)
      expect_error(clust(dat, times, coords, "coh", weighted = FALSE), 
          "Error in clust: unweighted networks available only if method involves a significance test")
      expect_error(clust(dat, times, coords, "test"), "Error in clust: bad value of method")
      coords <- matrix(1:20, 10, 2)
      expect_error(clust(dat, times, coords, "coh"), "Error in clust: coords must be a data frame")
      coords <- data.frame(X = 1:9, Y = 11:19)
      expect_error(clust(dat, times, coords, "coh"), "Error in clust: coords must have one row for each row of dat")
      coords <- data.frame(A = 1:10, B = 11:20)
      expect_error(clust(dat, times, coords, "coh"), "Error in clust: coords must have columns X and Y, or lon and lat, or longitude and latitude")
  })
  where 19: eval(code, test_env)
  where 20: eval(code, test_env)
  where 21: withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error)
  where 22: doTryCatch(return(expr), name, parentenv, handler)
  where 23: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  where 24: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
  where 25: doTryCatch(return(expr), name, parentenv, handler)
  where 26: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), 
      names[nh], parentenv, handlers[[nh]])
  where 27: tryCatchList(expr, classes, parentenv, handlers)
  where 28: tryCatch(withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error), error = handle_fatal, 
      skip = function(e) {
      })
  where 29: test_code(NULL, exprs, env)
  where 30: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
  where 31: force(code)
  where 32: doWithOneRestart(return(expr), restart)
  where 33: withOneRestart(expr, restarts[[1L]])
  where 34: withRestarts(testthat_abort_reporter = function() NULL, force(code))
  where 35: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter, 
      {
          reporter$start_file(basename(path))
          lister$start_file(basename(path))
          source_file(path, new.env(parent = env), chdir = TRUE, 
              wrap = wrap)
          reporter$.end_context()
          reporter$end_file()
      })
  where 36: FUN(X[[i]], ...)
  where 37: lapply(paths, test_file, env = env, reporter = current_reporter, 
      start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
  where 38: force(code)
  where 39: doWithOneRestart(return(expr), restart)
  where 40: withOneRestart(expr, restarts[[1L]])
  where 41: withRestarts(testthat_abort_reporter = function() NULL, force(code))
  where 42: with_reporter(reporter = current_reporter, results <- lapply(paths, 
      test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE, 
      load_helpers = FALSE, wrap = wrap))
  where 43: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure, 
      stop_on_warning = stop_on_warning, wrap = wrap)
  where 44: test_dir(path = test_path, reporter = reporter, env = env, filter = filter, 
      ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, 
      wrap = wrap)
  where 45: test_package_dir(package = package, test_path = test_path, filter = filter, 
      reporter = reporter, ..., stop_on_failure = stop_on_failure, 
      stop_on_warning = stop_on_warning, wrap = wrap)
  where 46: test_check("wsyn")
  
   --- value of length: 2 type: logical ---
  [1] TRUE TRUE
   --- function from context --- 
  function (dat, times, coords, method, tsrange = c(0, Inf), nsurrogs = 1000, 
      scale.min = 2, scale.max.input = NULL, sigma = 1.05, f0 = 1, 
      weighted = TRUE, sigthresh = 0.95) 
  {
      errcheck_stdat(times, dat, "clust")
      if (class(coords) != "data.frame") {
          stop("Error in clust: coords must be a data frame")
      }
      if (dim(coords)[1] != dim(dat)[1]) {
          stop("Error in clust: coords must have one row for each row of dat")
      }
      if (!(all(c("X", "Y") %in% names(coords))) && !(all(c("lat", 
          "lon") %in% names(coords))) && !(all(c("latitude", "longitude") %in% 
          names(coords)))) {
          stop("Error in clust: coords must have columns X and Y, or lon and lat, or longitude and latitude")
      }
      if (!(method %in% c("pearson", "pearson.sig.std", "pearson.sig.fft", 
          "pearson.sig.aaft", "spearman", "spearman.sig.std", "spearman.sig.fft", 
          "spearman.sig.aaft", "kendall", "kendall.sig.std", "kendall.sig.fft", 
          "kendall.sig.aaft", "ReXWT", "ReXWT.sig.fft", "ReXWT.sig.aaft", 
          "ReXWT.sig.fast", "coh", "coh.sig.fft", "coh.sig.aaft", 
          "coh.sig.fast", "phasecoh", "phasecoh.sig.fft", "phasecoh.sig.aaft"))) {
          stop("Error in clust: bad value of method")
      }
      if ((!weighted) && (!grepl("sig", method))) {
          stop("Error in clust: unweighted networks available only if method involves a significance test")
      }
      errcheck_wavparam(scale.min, scale.max.input, sigma, f0, 
          times, "clust")
      if (sigthresh <= 0 || sigthresh >= 1) {
          stop("Error in clust: inappropriate value for sigthresh")
      }
      methodspecs <- list(method = method, tsrange = tsrange, nsurrogs = nsurrogs, 
          scale.min = scale.min, scale.max.input = scale.max.input, 
          sigma = sigma, f0 = f0, weighted = weighted, sigthresh = sigthresh)
      adj <- synmat(dat, times, method, tsrange, nsurrogs, scale.min, 
          scale.max.input, sigma, f0, weighted, sigthresh)
      adjd <- adj
      diag(adjd) <- 0
      clusters <- cluseigen(adjd)
      modres <- list()
      for (counter in 1:length(clusters)) {
          modres[[counter]] <- modularity(adj = adjd, membership = clusters[[counter]], 
              decomp = TRUE)
      }
      mns <- list()
      for (lcount in 1:length(clusters)) {
          mem <- clusters[[lcount]]
          mns[[lcount]] <- matrix(NA, max(mem), length(times))
          for (ccount in 1:(max(mem))) {
              mns[[lcount]][ccount, ] <- apply(FUN = mean, MARGIN = 2, 
                  X = dat[mem == ccount, , drop = F])
          }
      }
      result <- list(dat = dat, times = times, coords = coords, 
          methodspecs = methodspecs, adj = adj, clusters = clusters, 
          modres = modres, mns = mns, wmfs = NA, wpmfs = NA)
      class(result) <- c("clust", "list")
      return(result)
  }
  <bytecode: 0x4c049c0>
  <environment: namespace:wsyn>
   --- function search by body ---
  Function clust in namespace wsyn has this body.
   ----------- END OF FAILURE REPORT -------------- 
  -- 1. Failure: test error checking (@tests_clust.R#13)  ------------------------
  `clust(dat, times, coords, "coh")` threw an error with unexpected message.
  Expected match: "Error in clust: coords must be a data frame"
  Actual message: "the condition has length > 1"
  Backtrace:
   1. testthat::expect_error(clust(dat, times, coords, "coh"), "Error in clust: coords must be a data frame")
   6. wsyn::clust(dat, times, coords, "coh")
  
  == testthat results  ===========================================================
  [ OK: 933 | SKIPPED: 20 | WARNINGS: 0 | FAILED: 1 ]
  1. Failure: test error checking (@tests_clust.R#13) 
  
  Error: testthat unit tests failed
  Execution halted