Error(s) in re-building vignettes:
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--- re-building ‘metaboGSE.Rmd’ using rmarkdown
Loading required package: sybil
Loading required package: Matrix
Loading required package: lattice
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following object is masked from 'package:Matrix':

    which

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:Matrix':

    expand

The following object is masked from 'package:base':

    expand.grid

Loading required package: ape
Loading required package: topGO
Loading required package: graph

Attaching package: 'graph'

The following objects are masked from 'package:ape':

    complement, edges

Loading required package: GO.db

Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve


groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.

Attaching package: 'topGO'

The following object is masked from 'package:IRanges':

    members

The following objects are masked from 'package:sybil':

    algorithm, algorithm<-, allGenes, genes

Loading required package: glpkAPI
using GLPK version 4.65

Building most specific GOs .....
	( 2362 GO terms found. )

Build GO DAG topology ..........
	( 4701 GO terms and 10518 relations. )

Annotating nodes ...............
	( 3626 genes annotated to the GO terms. )

			 -- Weight01 Algorithm -- 

		 the algorithm is scoring 982 nontrivial nodes
		 parameters: 
			 test statistic: fisher

	 Level 16:	1 nodes to be scored	(0 eliminated genes)

	 Level 15:	3 nodes to be scored	(0 eliminated genes)

	 Level 14:	5 nodes to be scored	(8 eliminated genes)

	 Level 13:	12 nodes to be scored	(21 eliminated genes)

	 Level 12:	19 nodes to be scored	(42 eliminated genes)

	 Level 11:	38 nodes to be scored	(231 eliminated genes)

	 Level 10:	82 nodes to be scored	(481 eliminated genes)

	 Level 9:	108 nodes to be scored	(881 eliminated genes)

	 Level 8:	113 nodes to be scored	(1227 eliminated genes)

	 Level 7:	135 nodes to be scored	(1615 eliminated genes)

	 Level 6:	171 nodes to be scored	(2323 eliminated genes)

	 Level 5:	153 nodes to be scored	(2848 eliminated genes)

	 Level 4:	89 nodes to be scored	(3154 eliminated genes)

	 Level 3:	40 nodes to be scored	(3401 eliminated genes)

	 Level 2:	12 nodes to be scored	(3530 eliminated genes)

	 Level 1:	1 nodes to be scored	(3582 eliminated genes)
! LaTeX Error: Environment cslreferences undefined.

Error: processing vignette 'metaboGSE.Rmd' failed with diagnostics:
Failed to compile metaboGSE.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See metaboGSE.log for more info.
--- failed re-building ‘metaboGSE.Rmd’

SUMMARY: processing the following file failed:
  ‘metaboGSE.Rmd’

Error: Vignette re-building failed.
Execution halted