Running ‘testthat.R’ [11s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(cleanEHR)
  > 
  > 
  > test_check("cleanEHR")
   ----------- FAILURE REPORT -------------- 
   --- failure: the condition has length > 1 ---
   --- srcref --- 
  : 
   --- package (from environment) --- 
  cleanEHR
   --- call from context --- 
  icnarc.breakdown(c("1", "1.2.3.4"))
   --- call from argument --- 
  if (class(cols) == "numeric") return(combine(cols)) else return(apply(cols, 
      1, combine))
   --- R stacktrace ---
  where 1: icnarc.breakdown(c("1", "1.2.3.4"))
  where 2: eval_bare(expr, quo_get_env(quo))
  where 3: quasi_label(enquo(object), label, arg = "object")
  where 4 at testthat/test_utilities.r#14: expect_equivalent(icnarc.breakdown(c("1", "1.2.3.4")), c("1", 
      "1.2.3"))
  where 5: eval(code, test_env)
  where 6: eval(code, test_env)
  where 7: withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error)
  where 8: doTryCatch(return(expr), name, parentenv, handler)
  where 9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  where 10: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
  where 11: doTryCatch(return(expr), name, parentenv, handler)
  where 12: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), 
      names[nh], parentenv, handlers[[nh]])
  where 13: tryCatchList(expr, classes, parentenv, handlers)
  where 14: tryCatch(withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error), error = handle_fatal, 
      skip = function(e) {
      })
  where 15: test_code(desc, code, env = parent.frame())
  where 16 at testthat/test_utilities.r#3: test_that("break down ICNARC code", {
      expect_equivalent(icnarc.breakdown("1.2.3.4.5"), "1.2.3")
      expect_equivalent(icnarc.breakdown("1.2.3.4.5", 4), "1.2.3.4")
      expect_equivalent(icnarc.breakdown("10.2.3.4.5"), "10.2.3")
      expect_equivalent(icnarc.breakdown("01.2.3.4.5"), "1.2.3")
      expect_equivalent(icnarc.breakdown("1.2.3"), "1.2.3")
      expect_equivalent(icnarc.breakdown("1.2"), "1.2")
      expect_equivalent(icnarc.breakdown("1"), "1")
      expect_equivalent(icnarc.breakdown(c("1", "1.2.3.4")), c("1", 
          "1.2.3"))
  })
  where 17: eval(code, test_env)
  where 18: eval(code, test_env)
  where 19: withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error)
  where 20: doTryCatch(return(expr), name, parentenv, handler)
  where 21: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  where 22: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
  where 23: doTryCatch(return(expr), name, parentenv, handler)
  where 24: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), 
      names[nh], parentenv, handlers[[nh]])
  where 25: tryCatchList(expr, classes, parentenv, handlers)
  where 26: tryCatch(withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error), error = handle_fatal, 
      skip = function(e) {
      })
  where 27: test_code(NULL, exprs, env)
  where 28: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
  where 29: force(code)
  where 30: doWithOneRestart(return(expr), restart)
  where 31: withOneRestart(expr, restarts[[1L]])
  where 32: withRestarts(testthat_abort_reporter = function() NULL, force(code))
  where 33: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter, 
      {
          reporter$start_file(basename(path))
          lister$start_file(basename(path))
          source_file(path, new.env(parent = env), chdir = TRUE, 
              wrap = wrap)
          reporter$.end_context()
          reporter$end_file()
      })
  where 34: FUN(X[[i]], ...)
  where 35: lapply(paths, test_file, env = env, reporter = current_reporter, 
      start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
  where 36: force(code)
  where 37: doWithOneRestart(return(expr), restart)
  where 38: withOneRestart(expr, restarts[[1L]])
  where 39: withRestarts(testthat_abort_reporter = function() NULL, force(code))
  where 40: with_reporter(reporter = current_reporter, results <- lapply(paths, 
      test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE, 
      load_helpers = FALSE, wrap = wrap))
  where 41: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure, 
      stop_on_warning = stop_on_warning, wrap = wrap)
  where 42: test_dir(path = test_path, reporter = reporter, env = env, filter = filter, 
      ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, 
      wrap = wrap)
  where 43: test_package_dir(package = package, test_path = test_path, filter = filter, 
      reporter = reporter, ..., stop_on_failure = stop_on_failure, 
      stop_on_warning = stop_on_warning, wrap = wrap)
  where 44: test_check("cleanEHR")
  
   --- value of length: 2 type: logical ---
  [1] FALSE FALSE
   --- function from context --- 
  function (r, digits = 3) 
  {
      cols <- strsplit(r, "[.]")
      cols <- lapply(cols, function(x) {
          x <- tryCatch(as.numeric(x), warning = function(w) {
              return(NA)
          })
          if (length(x) < 5) 
              x <- c(x, rep(NA, 5 - length(x)))
          if (length(x) > 5) 
              x <- x[1:5]
          x
      })
      cols <- t(data.frame(cols))
      rownames(cols) <- seq(nrow(cols))
      cols <- cols[, 1:digits]
      combine <- function(x) {
          x <- x[!is.na(x)]
          paste(x, collapse = ".")
      }
      if (digits == 1) 
          return(as.character(cols))
      if (class(cols) == "numeric") 
          return(combine(cols))
      else return(apply(cols, 1, combine))
  }
  <bytecode: 0x5589a4c91f50>
  <environment: namespace:cleanEHR>
   --- function search by body ---
  Function icnarc.breakdown in namespace cleanEHR has this body.
   ----------- END OF FAILURE REPORT -------------- 
  Fatal error: the condition has length > 1