Found the following significant warnings:
  DEploid/dEploidIO.cpp:681:73: warning: statement has no effect [-Wunused-value]
  DEploid/dEploidIO.cpp:726:106: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:98:65: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:99:65: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:100:65: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:134:65: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:135:65: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:136:65: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:274:21: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:275:74: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:319:65: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:320:65: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:321:65: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:421:60: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:512:44: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:525:44: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:528:35: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:537:35: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:550:35: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:554:35: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:584:40: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:594:125: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:633:38: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:639:125: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:683:59: warning: statement has no effect [-Wunused-value]
  DEploid/mcmc.cpp:705:88: warning: statement has no effect [-Wunused-value]
  DEploid/panel.cpp:171:66: warning: statement has no effect [-Wunused-value]
  DEploid/panel.cpp:172:66: warning: statement has no effect [-Wunused-value]
  DEploid/panel.cpp:191:70: warning: statement has no effect [-Wunused-value]
  DEploid/panel.cpp:192:93: warning: statement has no effect [-Wunused-value]
  DEploid/variantIndex.cpp:41:47: warning: statement has no effect [-Wunused-value]
  DEploid/variantIndex.cpp:46:59: warning: statement has no effect [-Wunused-value]
  DEploid/variantIndex.cpp:74:68: warning: statement has no effect [-Wunused-value]
  DEploid/variantIndex.cpp:78:79: warning: statement has no effect [-Wunused-value]
  DEploid/variantIndex.cpp:84:48: warning: statement has no effect [-Wunused-value]
  DEploid/vcfReader.cpp:127:87: warning: statement has no effect [-Wunused-value]
  DEploid/vcfReader.cpp:224:66: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:113:73: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:114:53: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:126:46: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:128:68: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:138:49: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:254:51: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:306:61: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:313:68: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:317:17: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:323:41: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:335:56: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:340:17: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:346:47: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:347:64: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:353:58: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:357:45: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:372:50: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:374:73: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:377:51: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:379:70: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:383:79: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:387:57: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:389:46: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:392:65: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:432:17: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:433:52: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:438:69: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:441:57: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:452:62: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:454:50: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:456:70: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:480:46: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:482:78: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:483:79: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:493:40: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:503:33: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:506:53: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lasso.cpp:508:17: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lassoDBG.cpp:36:66: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lassoDBG.cpp:40:50: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lassoDBG.cpp:43:17: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lassoDBG.cpp:45:55: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lassoDBG.cpp:47:64: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lassoDBG.cpp:49:17: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lassoDBG.cpp:56:34: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lassoDBG.cpp:58:29: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lassoDBG.cpp:60:17: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lassoDBG.cpp:68:26: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lassoDBG.cpp:70:42: warning: statement has no effect [-Wunused-value]
  DEploid/lasso/lassoDBG.cpp:72:48: warning: statement has no effect [-Wunused-value]
  DEploid/debug/vcfReaderDebug.cpp:33:58: warning: statement has no effect [-Wunused-value]
  DEploid/debug/mcmcDebug.cpp:30:39: warning: statement has no effect [-Wunused-value]
  DEploid/debug/mcmcDebug.cpp:33:29: warning: statement has no effect [-Wunused-value]
  DEploid/debug/mcmcDebug.cpp:35:17: warning: statement has no effect [-Wunused-value]
  DEploid/debug/mcmcDebug.cpp:42:49: warning: statement has no effect [-Wunused-value]
See 'd:/Rcompile/CRANpkg/local/3.7/DEploid.Rcheck/00install.out' for details.