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--- re-building ‘Ch_analysing_longitudinal_dataI.Rnw’ using Sweave
Loading required package: HSAUR2
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Error: processing vignette 'Ch_analysing_longitudinal_dataI.Rnw' failed with diagnostics:
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--- failed re-building 'Ch_analysing_longitudinal_dataI.Rnw'

--- re-building ‘Ch_analysing_longitudinal_dataII.Rnw’ using Sweave
Loading required package: HSAUR2
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Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
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Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
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running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
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Loading required package: Matrix
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!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building 'Ch_analysing_longitudinal_dataII.Rnw'

--- re-building ‘Ch_analysis_of_variance.Rnw’ using Sweave
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--- failed re-building 'Ch_analysis_of_variance.Rnw'

--- re-building ‘Ch_cluster_analysis.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Package 'mclust' version 5.4.5
Type 'citation("mclust")' for citing this R package in publications.

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Error: processing vignette 'Ch_cluster_analysis.Rnw' failed with diagnostics:
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--- failed re-building 'Ch_cluster_analysis.Rnw'

--- re-building ‘Ch_conditional_inference.Rnw’ using Sweave
Loading required package: HSAUR2
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Warning in chisq.test(suicides) :
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--- failed re-building 'Ch_conditional_inference.Rnw'

--- re-building ‘Ch_density_estimation.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
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Warning in sub(object$syntax$docexpr, val, chunk[pos[1L]]) :
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This is mboost 2.9-1. See 'package?mboost' and 'news(package  = "mboost")'
for a complete list of changes.

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--- re-building ‘Ch_recursive_partitioning.Rnw’ using Sweave
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!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building 'Ch_survival_analysis.Rnw'

SUMMARY: processing the following files failed:
  ‘Ch_analysing_longitudinal_dataI.Rnw’
  ‘Ch_analysing_longitudinal_dataII.Rnw’ ‘Ch_analysis_of_variance.Rnw’
  ‘Ch_cluster_analysis.Rnw’ ‘Ch_conditional_inference.Rnw’
  ‘Ch_density_estimation.Rnw’ ‘Ch_gam.Rnw’ ‘Ch_graphical_display.Rnw’
  ‘Ch_introduction_to_R.Rnw’ ‘Ch_logistic_regression_glm.Rnw’
  ‘Ch_meta_analysis.Rnw’ ‘Ch_multidimensional_scaling.Rnw’
  ‘Ch_multiple_linear_regression.Rnw’
  ‘Ch_principal_components_analysis.Rnw’
  ‘Ch_recursive_partitioning.Rnw’ ‘Ch_simple_inference.Rnw’
  ‘Ch_simultaneous_inference.Rnw’ ‘Ch_survival_analysis.Rnw’

Error: Vignette re-building failed.
Execution halted