Running ‘testthat.R’ [55s/281s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(NACHO)
  > 
  > test_check("NACHO")
  
  
  ── 1. Error: Default parameters (@test-render.R#2)  ────────────────────────────
  pandoc version 1.12.3 or higher is required and was not found (see the help page ?rmarkdown::pandoc_available).
  1: render(nacho_object = GSE74821) at testthat/test-render.R:2
  2: rmarkdown::render(input = temp_file, output_file = output_file, output_dir = output_dir, 
         encoding = "UTF-8", quiet = TRUE, params = list(nacho_object = nacho_object))
  3: pandoc_available(required_pandoc, error = TRUE)
  4: stop(paste(msg, collapse = " "), call. = FALSE)
  
  ── 2. Error: with legend (@test-render.R#7)  ───────────────────────────────────
  pandoc version 1.12.3 or higher is required and was not found (see the help page ?rmarkdown::pandoc_available).
  1: render(nacho_object = GSE74821, show_legend = TRUE) at testthat/test-render.R:7
  2: rmarkdown::render(input = temp_file, output_file = output_file, output_dir = output_dir, 
         encoding = "UTF-8", quiet = TRUE, params = list(nacho_object = nacho_object))
  3: pandoc_available(required_pandoc, error = TRUE)
  4: stop(paste(msg, collapse = " "), call. = FALSE)
  
  ── 3. Error: with Rmd (@test-render.R#12)  ─────────────────────────────────────
  pandoc version 1.12.3 or higher is required and was not found (see the help page ?rmarkdown::pandoc_available).
  1: render(nacho_object = GSE74821, clean = FALSE) at testthat/test-render.R:12
  2: rmarkdown::render(input = temp_file, output_file = output_file, output_dir = output_dir, 
         encoding = "UTF-8", quiet = TRUE, params = list(nacho_object = nacho_object))
  3: pandoc_available(required_pandoc, error = TRUE)
  4: stop(paste(msg, collapse = " "), call. = FALSE)
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74821/matrix/GSE74821_series_matrix.txt.gz'
  Content type 'application/x-gzip' length 488707 bytes (477 KB)
  ==================================================
  downloaded 477 KB
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74821/suppl//GSE74821_RAW.tar?tool=geoquery'
  Content type 'application/x-tar' length 2713600 bytes (2.6 MB)
  ==================================================
  downloaded 2.6 MB
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74821/suppl//GSE74821_RAW.tar?tool=geoquery'
  Content type 'application/x-tar' length 2713600 bytes (2.6 MB)
  ==================================================
  downloaded 2.6 MB
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74821/suppl//GSE74821_RAW.tar?tool=geoquery'
  Content type 'application/x-tar' length 2713600 bytes (2.6 MB)
  ==================================================
  downloaded 2.6 MB
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74821/suppl//GSE74821_RAW.tar?tool=geoquery'
  Content type 'application/x-tar' length 2713600 bytes (2.6 MB)
  ==================================================
  downloaded 2.6 MB
  
  
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74821/suppl//GSE74821_RAW.tar?tool=geoquery'
  Content type 'application/x-tar' length 2713600 bytes (2.6 MB)
  ==================================================
  downloaded 2.6 MB
  
  
  
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74821/suppl//GSE74821_RAW.tar?tool=geoquery'
  Content type 'application/x-tar' length 2713600 bytes (2.6 MB)
  ==================================================
  downloaded 2.6 MB
  
  
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74821/suppl//GSE74821_RAW.tar?tool=geoquery'
  Content type 'application/x-tar' length 2713600 bytes (2.6 MB)
  ==================================================
  downloaded 2.6 MB
  
  
  
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE70nnn/GSE70970/matrix/GSE70970_series_matrix.txt.gz'
  Content type 'application/x-gzip' length 351607 bytes (343 KB)
  ==================================================
  downloaded 343 KB
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE70nnn/GSE70970/suppl//GSE70970_RAW.tar?tool=geoquery'
  Content type 'application/x-tar' length 1986560 bytes (1.9 MB)
  ==================================================
  downloaded 1.9 MB
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE70nnn/GSE70970/suppl//GSE70970_characteristics_readme.txt.gz?tool=geoquery'
  Content type 'application/x-gzip' length 672 bytes
  ==================================================
  downloaded 672 bytes
  
  
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE70nnn/GSE70970/suppl//GSE70970_RAW.tar?tool=geoquery'
  Content type 'application/x-tar' length 1986560 bytes (1.9 MB)
  ==================================================
  downloaded 1.9 MB
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE70nnn/GSE70970/suppl//GSE70970_characteristics_readme.txt.gz?tool=geoquery'
  Content type 'application/x-gzip' length 672 bytes
  ==================================================
  downloaded 672 bytes
  
  
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 75 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
  1. Error: Default parameters (@test-render.R#2) 
  2. Error: with legend (@test-render.R#7) 
  3. Error: with Rmd (@test-render.R#12) 
  
  Error: testthat unit tests failed
  Execution halted