Error(s) in re-building vignettes:
--- re-building ‘CO69.Rmd’ using knitr
Loading required package: sp
Loading required package: spData
To access larger datasets in this package, install the spDataLarge
package with: `install.packages('spDataLarge',
repos='https://nowosad.github.io/drat/', type='source')`
Loading required package: sf
Linking to GEOS 3.7.1, GDAL 2.3.2, PROJ 5.2.0
rgdal: version: 1.4-6, (SVN revision 841)
 Geospatial Data Abstraction Library extensions to R successfully loaded
 Loaded GDAL runtime: GDAL 2.3.2, released 2018/09/21
 Path to GDAL shared files: /usr/share/gdal
 GDAL binary built with GEOS: TRUE 
 Loaded PROJ.4 runtime: Rel. 5.2.0, September 15th, 2018, [PJ_VERSION: 520]
 Path to PROJ.4 shared files: (autodetected)
 Linking to sp version: 1.3-1 
Checking rgeos availability: TRUE
Warning in diffnb(nb, lw_unstand$neighbours, verbose = TRUE) :
  region.id differ; using ids of first list
Warning in nb2listw(nb, glist = glist, style = "B") :
  zero sum general weights
Warning in nb2listw(nb, glist = glist, style = "B") :
  zero sum general weights
Warning in nb2listw(nb, glist = glist, style = "B") :
  zero sum general weights
Warning in nb2listw(nb, glist = glist, style = "B") :
  zero sum general weights
Warning in nb2listw(nb, glist = glist, style = "B") :
  zero sum general weights
Warning in nb2listw(nb, glist = glist, style = "B") :
  zero sum general weights
Warning in nb2listw(nb, glist = glist, style = "B") :
  zero sum general weights
Warning in nb2listw(nb, glist = glist, style = "B") :
  zero sum general weights
Warning in nb2listw(nb, glist = glist, style = "B") :
  zero sum general weights
Warning in nb2listw(nb, glist = glist, style = "B") :
  zero sum general weights
Warning in nb2listw(nb, glist = glist, style = "B") :
  zero sum general weights
Warning in nb2listw(nb, glist = glist, style = "B") :
  zero sum general weights
Warning in nb2listw(nb, glist = glist, style = "B") :
  zero sum general weights
Warning in nb2listw(nb, glist = glist, style = "B") :
  zero sum general weights
Warning in nb2listw(nb, glist = glist, style = "B") :
  zero sum general weights
Warning in nb2listw(nb, glist = glist, style = "B") :
  zero sum general weights
--- finished re-building ‘CO69.Rmd’

--- re-building ‘nb_igraph.Rmd’ using knitr
--- finished re-building ‘nb_igraph.Rmd’

--- re-building ‘nb_sf.Rmd’ using knitr
--- finished re-building ‘nb_sf.Rmd’

--- re-building ‘sids.Rmd’ using knitr
Loading required package: sp
Loading required package: spData
To access larger datasets in this package, install the spDataLarge
package with: `install.packages('spDataLarge',
repos='https://nowosad.github.io/drat/', type='source')`
Loading required package: sf
Linking to GEOS 3.7.1, GDAL 2.3.2, PROJ 5.2.0
Warning in st_centroid.sfc(st_geometry(nc), of_largest_polygon = TRUE) :
  st_centroid does not give correct centroids for longitude/latitude data
Warning in st_centroid.sfc(st_geometry(nc), of_largest_polygon) :
  st_centroid does not give correct centroids for longitude/latitude data
Warning in st_centroid.sfc(st_geometry(nc[card(ncCC89) == 0, ]), of_largest_polygon) :
  st_centroid does not give correct centroids for longitude/latitude data
The default for subtract_mean_in_numerator set TRUE from February 2016
--- finished re-building ‘sids.Rmd’

--- re-building ‘nb.Rnw’ using Sweave
rgdal: version: 1.4-6, (SVN revision 841)
 Geospatial Data Abstraction Library extensions to R successfully loaded
 Loaded GDAL runtime: GDAL 2.3.2, released 2018/09/21
 Path to GDAL shared files: /usr/share/gdal
 GDAL binary built with GEOS: TRUE 
 Loaded PROJ.4 runtime: Rel. 5.2.0, September 15th, 2018, [PJ_VERSION: 520]
 Path to PROJ.4 shared files: (autodetected)
 Linking to sp version: 1.3-1 
Loading required package: spData
To access larger datasets in this package, install the spDataLarge package with:
`install.packages('spDataLarge', repos='https://nowosad.github.io/drat/',
type='source')`
Loading required package: sf
Linking to GEOS 3.7.1, GDAL 2.3.2, PROJ 5.2.0

     PLEASE NOTE:  The components "delsgs" and "summary" of the
 object returned by deldir() are now DATA FRAMES rather than
 matrices (as they were prior to release 0.0-18).
 See help("deldir").
 
     PLEASE NOTE: The process that deldir() uses for determining
 duplicated points has changed from that used in version
 0.0-9 of this package (and previously). See help("deldir").


rgeos version: 0.5-2, (SVN revision 621)
 GEOS runtime version: 3.7.1-CAPI-1.11.1 
 Linking to sp version: 1.3-1 
 Polygon checking: TRUE 

Error: processing vignette 'nb.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'nb.tex' failed.
LaTeX errors:
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.192 ...s[width=0.95\textwidth]{Fig-bitmap-1.pdf}
                                                  \caption{(\textbf{a})
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\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.192 ...s[width=0.95\textwidth]{Fig-bitmap-1.pdf}
                                                  \caption{(\textbf{a})
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<recently read> \unquote@name 
                              
l.192 ...s[width=0.95\textwidth]{Fig-bitmap-1.pdf}
                                                  \caption{(\textbf{a})
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<recently read> \quote@name 
                            
l.192 ...s[width=0.95\textwidth]{Fig-bitmap-1.pdf}
                                                  \caption{(\textbf{a})
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<recently read> \quote@name 
                            
l.192 ...s[width=0.95\textwidth]{Fig-bitmap-1.pdf}
                                                  \caption{(\textbf{a})
! LaTeX Error: File `Fig-bitmap-1.pdf' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.302 ...s[width=0.95\textwidth]{Fig-bitmap-2.pdf}
                                                  \caption{(\textbf{a})
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.302 ...s[width=0.95\textwidth]{Fig-bitmap-2.pdf}
                                                  \caption{(\textbf{a})
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<recently read> \unquote@name 
                              
l.302 ...s[width=0.95\textwidth]{Fig-bitmap-2.pdf}
                                                  \caption{(\textbf{a})
! Undefined control sequence.
<recently read> \quote@name 
                            
l.302 ...s[width=0.95\textwidth]{Fig-bitmap-2.pdf}
                                                  \caption{(\textbf{a})
! Undefined control sequence.
<recently read> \quote@name 
                            
l.302 ...s[width=0.95\textwidth]{Fig-bitmap-2.pdf}
                                                  \caption{(\textbf{a})
! LaTeX Error: File `Fig-bitmap-2.pdf' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.389 ...s[width=0.95\textwidth]{Fig-bitmap-3.pdf}
                                                  \caption{(\textbf{a})
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.389 ...s[width=0.95\textwidth]{Fig-bitmap-3.pdf}
                                                  \caption{(\textbf{a})
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.389 ...s[width=0.95\textwidth]{Fig-bitmap-3.pdf}
                                                  \caption{(\textbf{a})
! Undefined control sequence.
<recently read> \quote@name 
                            
l.389 ...s[width=0.95\textwidth]{Fig-bitmap-3.pdf}
                                                  \caption{(\textbf{a})
! Undefined control sequence.
<recently read> \quote@name 
                            
l.389 ...s[width=0.95\textwidth]{Fig-bitmap-3.pdf}
                                                  \caption{(\textbf{a})
! LaTeX Error: File `Fig-bitmap-3.pdf' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.450 ...s[width=0.95\textwidth]{Fig-bitmap-4.pdf}
                                                  \caption{(\textbf{a})
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.450 ...s[width=0.95\textwidth]{Fig-bitmap-4.pdf}
                                                  \caption{(\textbf{a})
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.450 ...s[width=0.95\textwidth]{Fig-bitmap-4.pdf}
                                                  \caption{(\textbf{a})
! Undefined control sequence.
<recently read> \quote@name 
                            
l.450 ...s[width=0.95\textwidth]{Fig-bitmap-4.pdf}
                                                  \caption{(\textbf{a})
! Undefined control sequence.
<recently read> \quote@name 
                            
l.450 ...s[width=0.95\textwidth]{Fig-bitmap-4.pdf}
                                                  \caption{(\textbf{a})
! LaTeX Error: File `Fig-bitmap-4.pdf' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.457 ...s[width=0.95\textwidth]{Fig-bitmap-5.pdf}
                                                  \caption{Distance-based
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\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.457 ...s[width=0.95\textwidth]{Fig-bitmap-5.pdf}
                                                  \caption{Distance-based
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.457 ...s[width=0.95\textwidth]{Fig-bitmap-5.pdf}
                                                  \caption{Distance-based
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<recently read> \quote@name 
                            
l.457 ...s[width=0.95\textwidth]{Fig-bitmap-5.pdf}
                                                  \caption{Distance-based
! Undefined control sequence.
<recently read> \quote@name 
                            
l.457 ...s[width=0.95\textwidth]{Fig-bitmap-5.pdf}
                                                  \caption{Distance-based
! LaTeX Error: File `Fig-bitmap-5.pdf' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
--- failed re-building ‘nb.Rnw’

SUMMARY: processing the following file failed:
  ‘nb.Rnw’

Error: Vignette re-building failed.
Execution halted