Error(s) in re-building vignettes:
--- re-building ‘article.Rnw’ using Sweave
Loading required package: coda

Calling GIS_C MCMC sampler with 11000 iter. Series length is 3139.

                                                         ] 100%
  0% [+++++++++++++++++++++++++++++++++++++++++++++++++++] 100%

Timing (elapsed): 19.539 seconds.
563 iterations per second.

Converting results to coda objects... Done!
Summarizing posterior draws... Done!

Warning in plot.window(...) : "show.obs" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
  "show.obs" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "show.obs" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "show.obs" is not a graphical parameter
Warning in box(...) : "show.obs" is not a graphical parameter
Warning in title(...) : "show.obs" is not a graphical parameter
Warning in plot.window(...) : "show.obs" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
  "show.obs" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "show.obs" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "show.obs" is not a graphical parameter
Warning in box(...) : "show.obs" is not a graphical parameter
Warning in title(...) : "show.obs" is not a graphical parameter
Warning in plot.window(...) : "show.obs" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
  "show.obs" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "show.obs" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "show.obs" is not a graphical parameter
Warning in box(...) : "show.obs" is not a graphical parameter
Warning in title(...) : "show.obs" is not a graphical parameter
Warning in plot.window(...) : "show.obs" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
  "show.obs" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "show.obs" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "show.obs" is not a graphical parameter
Warning in box(...) : "show.obs" is not a graphical parameter
Warning in title(...) : "show.obs" is not a graphical parameter
Warning in plot.window(...) : "show.obs" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
  "show.obs" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "show.obs" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "show.obs" is not a graphical parameter
Warning in box(...) : "show.obs" is not a graphical parameter
Warning in title(...) : "show.obs" is not a graphical parameter
Warning in plot.window(...) : "show.obs" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
  "show.obs" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "show.obs" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "show.obs" is not a graphical parameter
Warning in box(...) : "show.obs" is not a graphical parameter
Warning in title(...) : "show.obs" is not a graphical parameter
Warning in plot.window(...) : "show.obs" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
  "show.obs" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "show.obs" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "show.obs" is not a graphical parameter
Warning in box(...) : "show.obs" is not a graphical parameter
Warning in title(...) : "show.obs" is not a graphical parameter
--- finished re-building ‘article.Rnw’

--- re-building ‘heavytails.Rnw’ using Sweave
Loading required package: coda

Calling GIS_C MCMC sampler with 12000 iter. Series length is 3139.

                                                         ] 100%
  0% [+++++++++++++++++++++++++++++++++++++++++++++++++++] 100%

Timing (elapsed): 67.952 seconds.
177 iterations per second.

Converting results to coda objects... Done!
Summarizing posterior draws... Done!

--- finished re-building ‘heavytails.Rnw’

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! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
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l.185 ...egraphics[width=\textwidth]{article-usd1}
                                                  
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!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on article.log.
make[1]: *** [Makefile:6: article.pdf] Error 1
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/stochvol.Rcheck/vign_test/stochvol/vignettes'
Error in tools:::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-clang/stochvol.Rcheck/vign_test/stochvol",  : 
  running 'make' failed
Execution halted