Error(s) in re-building vignettes:
--- re-building ‘using_the_vennLasso_package.Rmd’ using rmarkdown
tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
tlmgr search --file --global '/tikzlibraryshapes.code.tex'
tlmgr search --file --global '/tikzlibrarybackgrounds.code.tex'
tlmgr search --file --global '/tikzlibrarypositioning.code.tex'
tlmgr search --file --global '/tikzlibraryarrows.code.tex'
tlmgr search --file --global '/tikzlibrarymatrix.code.tex'
tlmgr search --file --global '/tikzlibraryfit.code.tex'
tlmgr search --file --global '/tikzlibrarycalc.code.tex'
tlmgr search --file --global '/tikzlibrarytrees.code.tex'
Trying to automatically install missing LaTeX packages...
tlmgr install pgf
tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
tlmgr install: package already present: pgf
tlmgr path add
add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
tlmgr search --file --global '/tikzlibraryshapes.code.tex'
tlmgr search --file --global '/tikzlibrarybackgrounds.code.tex'
tlmgr search --file --global '/tikzlibrarypositioning.code.tex'
tlmgr search --file --global '/tikzlibraryarrows.code.tex'
tlmgr search --file --global '/tikzlibrarymatrix.code.tex'
tlmgr search --file --global '/tikzlibraryfit.code.tex'
tlmgr search --file --global '/tikzlibrarycalc.code.tex'
tlmgr search --file --global '/tikzlibrarytrees.code.tex'
! Undefined control sequence.
\grffile@org@Ginclude@graphics ... \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.647 ...ckage_files/figure-latex/plotpaths-1.pdf}

Error: processing vignette 'using_the_vennLasso_package.Rmd' failed with diagnostics:
Failed to compile using_the_vennLasso_package.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See using_the_vennLasso_package.log for more info.
--- failed re-building ‘using_the_vennLasso_package.Rmd’

SUMMARY: processing the following file failed:
  ‘using_the_vennLasso_package.Rmd’

Error: Vignette re-building failed.
Execution halted