Error(s) in re-building vignettes:
--- re-building ‘cap-recap.Rnw’ using Sweave
Loading required package: lattice
Loading required package: parallel
Loading required package: Rcpp
Loading required package: reshape2
Error: processing vignette 'cap-recap.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'cap-recap.tex' failed.
LaTeX errors:
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.475 ...cs[width=4in,height=4in]{cap-recap-woody}
                                                  
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.475 ...cs[width=4in,height=4in]{cap-recap-woody}
                                                  
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.475 ...cs[width=4in,height=4in]{cap-recap-woody}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.475 ...cs[width=4in,height=4in]{cap-recap-woody}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.475 ...cs[width=4in,height=4in]{cap-recap-woody}
                                                  
! LaTeX Error: File `cap-recap-woody' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
--- failed re-building ‘cap-recap.Rnw’

--- re-building ‘colext.Rnw’ using Sweave
Loading required package: lattice
Loading required package: parallel
Loading required package: Rcpp
Loading required package: reshape2
Error: processing vignette 'colext.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'colext.tex' failed.
LaTeX errors:
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.443 ...ics[width=5in,height=5in]{colext-sim.pdf}
                                                  
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.443 ...ics[width=5in,height=5in]{colext-sim.pdf}
                                                  
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.443 ...ics[width=5in,height=5in]{colext-sim.pdf}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.443 ...ics[width=5in,height=5in]{colext-sim.pdf}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.443 ...ics[width=5in,height=5in]{colext-sim.pdf}
                                                  
! LaTeX Error: File `colext-sim.pdf' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.831 ...dth=3in,height=7in]{colext-yearlysim.pdf}
                                                  
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.831 ...dth=3in,height=7in]{colext-yearlysim.pdf}
                                                  
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.831 ...dth=3in,height=7in]{colext-yearlysim.pdf}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.831 ...dth=3in,height=7in]{colext-yearlysim.pdf}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.831 ...dth=3in,height=7in]{colext-yearlysim.pdf}
                                                  
! LaTeX Error: File `colext-yearlysim.pdf' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.1036 ...cs[width=5in,height=5in]{colext-gof.pdf}
                                                  
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.1036 ...cs[width=5in,height=5in]{colext-gof.pdf}
                                                  
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.1036 ...cs[width=5in,height=5in]{colext-gof.pdf}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.1036 ...cs[width=5in,height=5in]{colext-gof.pdf}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.1036 ...cs[width=5in,height=5in]{colext-gof.pdf}
                                                  
! LaTeX Error: File `colext-gof.pdf' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.1363 ...cs[width=6in,height=3in]{colext-cov.pdf}
                                                  
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.1363 ...cs[width=6in,height=3in]{colext-cov.pdf}
                                                  
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.1363 ...cs[width=6in,height=3in]{colext-cov.pdf}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.1363 ...cs[width=6in,height=3in]{colext-cov.pdf}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.1363 ...cs[width=6in,height=3in]{colext-cov.pdf}
                                                  
! LaTeX Error: File `colext-cov.pdf' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
--- failed re-building ‘colext.Rnw’

--- re-building ‘distsamp.Rnw’ using Sweave
Loading required package: lattice
Loading required package: parallel
Loading required package: Rcpp
Loading required package: reshape2
Error: processing vignette 'distsamp.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'distsamp.tex' failed.
LaTeX errors:
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.232 ...s[width=4in,height=4in]{distsamp-umfhist}
                                                  
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.232 ...s[width=4in,height=4in]{distsamp-umfhist}
                                                  
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.232 ...s[width=4in,height=4in]{distsamp-umfhist}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.232 ...s[width=4in,height=4in]{distsamp-umfhist}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.232 ...s[width=4in,height=4in]{distsamp-umfhist}
                                                  
! LaTeX Error: File `distsamp-umfhist' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.522   \includegraphics{distsamp-predplot}
                                           
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.522   \includegraphics{distsamp-predplot}
                                           
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.522   \includegraphics{distsamp-predplot}
                                           
! Undefined control sequence.
<recently read> \quote@name 
                            
l.522   \includegraphics{distsamp-predplot}
                                           
! Undefined control sequence.
<recently read> \quote@name 
                            
l.522   \includegraphics{distsamp-predplot}
                                           
! LaTeX Error: File `distsamp-predplot' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.560   \includegraphics{distsamp-detplot}
                                          
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.560   \includegraphics{distsamp-detplot}
                                          
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.560   \includegraphics{distsamp-detplot}
                                          
! Undefined control sequence.
<recently read> \quote@name 
                            
l.560   \includegraphics{distsamp-detplot}
                                          
! Undefined control sequence.
<recently read> \quote@name 
                            
l.560   \includegraphics{distsamp-detplot}
                                          
! LaTeX Error: File `distsamp-detplot' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
--- failed re-building ‘distsamp.Rnw’

--- re-building ‘spp-dist.Rnw’ using Sweave
Loading required package: lattice
Loading required package: parallel
Loading required package: Rcpp
Loading required package: reshape2
Loading required package: sp

Attaching package: ‘sp’

The following object is masked from ‘package:unmarked’:

    coordinates


Attaching package: ‘raster’

The following objects are masked from ‘package:unmarked’:

    getData, projection

Warning: 22 sites have been discarded because of missing data.
Error: processing vignette 'spp-dist.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'spp-dist.tex' failed.
LaTeX errors:
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.159 ...ics[width=5in,height=4in]{spp-dist-swiss}
                                                  
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.159 ...ics[width=5in,height=4in]{spp-dist-swiss}
                                                  
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.159 ...ics[width=5in,height=4in]{spp-dist-swiss}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.159 ...ics[width=5in,height=4in]{spp-dist-swiss}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.159 ...ics[width=5in,height=4in]{spp-dist-swiss}
                                                  
! LaTeX Error: File `spp-dist-swiss' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.212 ...aphics[width=6in,height=3in]{spp-dist-ef}
                                                  
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.212 ...aphics[width=6in,height=3in]{spp-dist-ef}
                                                  
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.212 ...aphics[width=6in,height=3in]{spp-dist-ef}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.212 ...aphics[width=6in,height=3in]{spp-dist-ef}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.212 ...aphics[width=6in,height=3in]{spp-dist-ef}
                                                  
! LaTeX Error: File `spp-dist-ef' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.243 ...phics[width=4in,height=4in]{spp-dist-psi}
                                                  
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.243 ...phics[width=4in,height=4in]{spp-dist-psi}
                                                  
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.243 ...phics[width=4in,height=4in]{spp-dist-psi}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.243 ...phics[width=4in,height=4in]{spp-dist-psi}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.243 ...phics[width=4in,height=4in]{spp-dist-psi}
                                                  
! LaTeX Error: File `spp-dist-psi' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.271 ...hics[width=5in,height=5in]{spp-dist-psi2}
                                                  
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.271 ...hics[width=5in,height=5in]{spp-dist-psi2}
                                                  
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.271 ...hics[width=5in,height=5in]{spp-dist-psi2}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.271 ...hics[width=5in,height=5in]{spp-dist-psi2}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.271 ...hics[width=5in,height=5in]{spp-dist-psi2}
                                                  
! LaTeX Error: File `spp-dist-psi2' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.482 ...hics[width=6in,height=5in]{spp-dist-issj}
                                                  
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.482 ...hics[width=6in,height=5in]{spp-dist-issj}
                                                  
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.482 ...hics[width=6in,height=5in]{spp-dist-issj}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.482 ...hics[width=6in,height=5in]{spp-dist-issj}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.482 ...hics[width=6in,height=5in]{spp-dist-issj}
                                                  
! LaTeX Error: File `spp-dist-issj' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
--- failed re-building ‘spp-dist.Rnw’

--- re-building ‘unmarked.Rnw’ using Sweave
Loading required package: lattice
Loading required package: parallel
Loading required package: Rcpp
Loading required package: reshape2
Warning in truncateToBinary(y) :
  Some observations were > 1.  These were truncated to 1.
Warning in truncateToBinary(y) :
  Some observations were > 1.  These were truncated to 1.
Warning in truncateToBinary(y) :
  Some observations were > 1.  These were truncated to 1.
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
Warning in rbinom(M * J, 1, prob = p) : NAs produced
--- finished re-building ‘unmarked.Rnw’

SUMMARY: processing the following files failed:
  ‘cap-recap.Rnw’ ‘colext.Rnw’ ‘distsamp.Rnw’ ‘spp-dist.Rnw’

Error: Vignette re-building failed.
Execution halted