Error(s) in re-building vignettes:
--- re-building ‘untbpaper.Rnw’ using Sweave
Error: processing vignette 'untbpaper.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'untbpaper.tex' failed.
LaTeX errors:
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.326 \includegraphics{untbpaper-plotSaunders}
                                              
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.326 \includegraphics{untbpaper-plotSaunders}
                                              
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.326 \includegraphics{untbpaper-plotSaunders}
                                              
! Undefined control sequence.
<recently read> \quote@name 
                            
l.326 \includegraphics{untbpaper-plotSaunders}
                                              
! Undefined control sequence.
<recently read> \quote@name 
                            
l.326 \includegraphics{untbpaper-plotSaunders}
                                              
! LaTeX Error: File `untbpaper-plotSaunders' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.385 \includegraphics{untbpaper-supportTheta}
                                              
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.385 \includegraphics{untbpaper-supportTheta}
                                              
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.385 \includegraphics{untbpaper-supportTheta}
                                              
! Undefined control sequence.
<recently read> \quote@name 
                            
l.385 \includegraphics{untbpaper-supportTheta}
                                              
! Undefined control sequence.
<recently read> \quote@name 
                            
l.385 \includegraphics{untbpaper-supportTheta}
                                              
! LaTeX Error: File `untbpaper-supportTheta' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.457 ...ludegraphics{untbpaper-estimateMandTheta}
                                                  
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.457 ...ludegraphics{untbpaper-estimateMandTheta}
                                                  
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.457 ...ludegraphics{untbpaper-estimateMandTheta}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.457 ...ludegraphics{untbpaper-estimateMandTheta}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.457 ...ludegraphics{untbpaper-estimateMandTheta}
                                                  
! LaTeX Error: File `untbpaper-estimateMandTheta' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.520 ...ludegraphics{untbpaper-expectedAbundance}
                                                  
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.520 ...ludegraphics{untbpaper-expectedAbundance}
                                                  
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.520 ...ludegraphics{untbpaper-expectedAbundance}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.520 ...ludegraphics{untbpaper-expectedAbundance}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.520 ...ludegraphics{untbpaper-expectedAbundance}
                                                  
! LaTeX Error: File `untbpaper-expectedAbundance' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.546 \includegraphics{untbpaper-plot_thirdRank}
                                                
! Missing $ inserted.
<inserted text> 
                $
l.546 \includegraphics{untbpaper-plot_thirdRank}
                                                
! Extra }, or forgotten $.
\Ginclude@graphics ...put@path \set@curr@file {#1}
                                                  \edef \uq@curr@file {\expa...
l.546 \includegraphics{untbpaper-plot_thirdRank}
                                                
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.546 \includegraphics{untbpaper-plot_thirdRank}
                                                
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.546 \includegraphics{untbpaper-plot_thirdRank}
                                                
! Undefined control sequence.
<recently read> \quote@name 
                            
l.546 \includegraphics{untbpaper-plot_thirdRank}
                                                
! Undefined control sequence.
<recently read> \quote@name 
                            
l.546 \includegraphics{untbpaper-plot_thirdRank}
                                                
! LaTeX Error: File `untbpaper-plot_thirdRank' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Missing $ inserted.
<inserted text> 
                $
l.546 \includegraphics{untbpaper-plot_thirdRank}
                                                
! Missing } inserted.
<inserted text> 
                }
l.546 \includegraphics{untbpaper-plot_thirdRank}
                                                
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.572 ...graphics{untbpaper-matplot_species_table}
                                                  
! Missing $ inserted.
<inserted text> 
                $
l.572 ...graphics{untbpaper-matplot_species_table}
                                                  
! Extra }, or forgotten $.
\Ginclude@graphics ...put@path \set@curr@file {#1}
                                                  \edef \uq@curr@file {\expa...
l.572 ...graphics{untbpaper-matplot_species_table}
                                                  
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.572 ...graphics{untbpaper-matplot_species_table}
                                                  
! Undefined control sequence.
<recent
--- failed re-building ‘untbpaper.Rnw’

SUMMARY: processing the following file failed:
  ‘untbpaper.Rnw’

Error: Vignette re-building failed.
Execution halted