Error(s) in re-building vignettes:
--- re-building ‘glrnb.Rnw’ using Sweave
Loading required package: sp
Loading required package: xtable
This is surveillance 1.17.1. For overview type ‘help(surveillance)’.
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting glm.nb model with alpha=0.225966923076071
glrnb: Fitting glm.nb model with alpha=0.225966923076071
glrnb: Fitting glm.nb model with alpha=0.225966923076071
glrnb: Fitting glm.nb model with alpha=0.225966923076071
glrnb: Fitting glm.nb model with alpha=0.225966923076071
glrnb: Fitting glm.nb model with alpha=0.225966923076071
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
Error: processing vignette 'glrnb.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'glrnb.tex' failed.
LaTeX errors:
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.89 \includegraphics{plots/glrnb-002}
                                      
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.89 \includegraphics{plots/glrnb-002}
                                      
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.89 \includegraphics{plots/glrnb-002}
                                      
! Undefined control sequence.
<recently read> \quote@name 
                            
l.89 \includegraphics{plots/glrnb-002}
                                      
! Undefined control sequence.
<recently read> \quote@name 
                            
l.89 \includegraphics{plots/glrnb-002}
                                      
! LaTeX Error: File `plots/glrnb-002' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.107 \includegraphics{plots/glrnb-004}
                                       
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.107 \includegraphics{plots/glrnb-004}
                                       
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.107 \includegraphics{plots/glrnb-004}
                                       
! Undefined control sequence.
<recently read> \quote@name 
                            
l.107 \includegraphics{plots/glrnb-004}
                                       
! Undefined control sequence.
<recently read> \quote@name 
                            
l.107 \includegraphics{plots/glrnb-004}
                                       
! LaTeX Error: File `plots/glrnb-004' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.145 \includegraphics{plots/glrnb-005}
                                       
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.145 \includegraphics{plots/glrnb-005}
                                       
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.145 \includegraphics{plots/glrnb-005}
                                       
! Undefined control sequence.
<recently read> \quote@name 
                            
l.145 \includegraphics{plots/glrnb-005}
                                       
! Undefined control sequence.
<recently read> \quote@name 
                            
l.145 \includegraphics{plots/glrnb-005}
                                       
! LaTeX Error: File `plots/glrnb-005' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.234 \includegraphics{plots/glrnb-012}
                                       
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.234 \includegraphics{plots/glrnb-012}
                                       
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.234 \includegraphics{plots/glrnb-012}
                                       
! Undefined control sequence.
<recently read> \quote@name 
                            
l.234 \includegraphics{plots/glrnb-012}
                                       
! Undefined control sequence.
<recently read> \quote@name 
                            
l.234 \includegraphics{plots/glrnb-012}
                                       
! LaTeX Error: File `plots/glrnb-012' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.414 \includegraphics{plots/glrnb-021}
                                       
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.414 \includegraphics{plots/glrnb-021}
                                       
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.414 \includegraphics{plots/glrnb-021}
                                       
! Undefined control sequence.
<recently read> \quote@name 
                            
l.414 \includegraphics{plots/glrnb-021}
                                       
! Undefined control sequence.
<recently read> \quote@name 
                            
l.414 \includegraphics{plots/glrnb-021}
                                       
! LaTeX Error: File `plots/glrnb-021' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.430 \includegraphics{plots/glrnb-023}
                                       
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.430 \includegraphics{plots/glrnb-023}
                                       
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.430 \includegraphics{plots/glrnb-023}
                                       
! Undefined control sequence.
<recently read> \quote@name 
                            
l.430 \includegraphics{plots/glrnb-023}
                                       
! Undefined control sequence.
<recently read> \quote@name 
                            
l.430 \includegraphics{plots/glrnb-023}
                                       
! LaTeX Error: File `plots/glrnb-023' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
--- failed re-building ‘glrnb.Rnw’

--- re-building ‘hhh4.Rnw’ using Sweave
Loading required package: sp
Loading required package: xtable
This is surveillance 1.17.1. For overview type ‘help(surveillance)’.
Doing computations: FALSE
Error: processing vignette 'hhh4.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'hhh4.tex' failed.
LaTeX errors:
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.218 \includegraphics{plots/hhh4-plotfluMen}
                                             
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.218 \includegraphics{plots/hhh4-plotfluMen}
                                             
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.218 \includegraphics{plots/hhh4-plotfluMen}
                                             
! Undefined control sequence.
<recently read> \quote@name 
                            
l.218 \includegraphics{plots/hhh4-plotfluMen}
                                             
! Undefined control sequence.
<recently read> \quote@name 
                            
l.218 \includegraphics{plots/hhh4-plotfluMen}
                                             
! LaTeX Error: File `plots/hhh4-plotfluMen' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.251 \includegraphics{plots/hhh4-nhoodByBw}
                                            
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.251 \includegraphics{plots/hhh4-nhoodByBw}
                                            
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.251 \includegraphics{plots/hhh4-nhoodByBw}
                                            
! Undefined control sequence.
<recently read> \quote@name 
                            
l.251 \includegraphics{plots/hhh4-nhoodByBw}
                                            
! Undefined control sequence.
<recently read> \quote@name 
                            
l.251 \includegraphics{plots/hhh4-nhoodByBw}
                                            
! LaTeX Error: File `plots/hhh4-nhoodByBw' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.287 \includegraphics{plots/hhh4-plot-flu-ByBw}
                                                
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.287 \includegraphics{plots/hhh4-plot-flu-ByBw}
                                                
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.287 \includegraphics{plots/hhh4-plot-flu-ByBw}
                                                
! Undefined control sequence.
<recently read> \quote@name 
                            
l.287 \includegraphics{plots/hhh4-plot-flu-ByBw}
                                                
! Undefined control sequence.
<recently read> \quote@name 
                            
l.287 \includegraphics{plots/hhh4-plot-flu-ByBw}
                                                
! LaTeX Error: File `plots/hhh4-plot-flu-ByBw' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.316 \includegraphics{plots/hhh4-plot-measles}
                                               
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.316 \includegraphics{plots/hhh4-plot-measles}
                                               
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.316 \includegraphics{plots/hhh4-plot-measles}
                                               
! Undefined control sequence.
<recently read> \quote@name 
                            
l.316 \includegraphics{plots/hhh4-plot-measles}
                                               
! Undefined control sequence.
<recently read> \quote@name 
                            
l.316 \includegraphics{plots/hhh4-plot-measles}
                                               
! LaTeX Error: File `plots/hhh4-plot-measles' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.602 \includegraphics{plots/hhh4-plot_result2}
                                               
! Missing $ inserted.
<inserted text> 
                $
l.602 \includegraphics{plots/hhh4-plot_result2}
                                               
! Extra }, or forgotten $.
\Ginclude@graphics ...put@path \set@curr@file {#1}
                                                  \edef \uq@curr@file {\expa...
l.602 \includegraphics{plots/hhh4-plot_result2}
                                               
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.602 \includegraphics{plots/hhh4-plot_result2}
                                               
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<recently read> \unquote@name 
                              
l.602 \includegraphics{plots/hhh4-plot_result2}
                                               
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<recently read> \quote@name 
                            
l.602 \includegraphics{plots/hhh4-plot_result2}
                                               
! Undefined control sequence.
<recently read> \quote@name 
                            
l.602 \includegraphics{plots/hhh4-plot_result2}
                                               
! LaTeX Error: File `plots/hhh4-plot_result2' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Missing $ inserted.
<inserted text> 
                $
l.602 \includegraphics{plots/hhh4-plot_result2}
                                               
! Missing } inserted.
<inserted text> 
                }
l.602 \includegraphics{plots/hhh4-plot_result2}
                                               
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.700 \includegraphics{plots/hhh4-plot-fit_men}
                                               
! Missing $ inserted.
<inserted text> 
                $
l.700 \includegraphics{plots/hhh4-plot-fit_men}
                                               
! Extra }, or forgotten $.
\Ginclude@graphics ...put@path \set@curr@file {#1}
                                                  \edef \uq@curr@file {\expa...
l.700 \includegraphics{plots/hhh4-plot-fit_men}
                                               
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.700 \includegraphics{plots/hhh4-plot-fit_men}
                                               
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.700 \includegraphics{plots/hhh4-plot-fit_men}
                                   
--- failed re-building ‘hhh4.Rnw’

--- re-building ‘monitoringCounts.Rnw’ using Sweave
Loading required package: sp
Loading required package: xtable
This is surveillance 1.17.1. For overview type ‘help(surveillance)’.
Loading required package: splines
Loading required package: gamlss.data

Attaching package: ‘gamlss.data’

The following object is masked from ‘package:datasets’:

    sleep

Loading required package: gamlss.dist
Loading required package: MASS
Loading required package: nlme
Loading required package: parallel
 **********   GAMLSS Version 5.1-4  ********** 
For more on GAMLSS look at http://www.gamlss.org/
Type gamlssNews() to see new features/changes/bug fixes.

Warning in model.matrix.default(mt, mf, contrasts) :
  non-list contrasts argument ignored
Warning in model.matrix.default(mt, mf, contrasts) :
  non-list contrasts argument ignored
Error: processing vignette 'monitoringCounts.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'monitoringCounts.tex' failed.
LaTeX errors:
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.152 ...phics{plots/monitoringCounts-NewportPlot}
                                                  
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.152 ...phics{plots/monitoringCounts-NewportPlot}
                                                  
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.152 ...phics{plots/monitoringCounts-NewportPlot}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.152 ...phics{plots/monitoringCounts-NewportPlot}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.152 ...phics{plots/monitoringCounts-NewportPlot}
                                                  
! LaTeX Error: File `plots/monitoringCounts-NewportPlot' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.183 }
       \hspace{-3em}%
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\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.183 }
       \hspace{-3em}%
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<recently read> \unquote@name 
                              
l.183 }
       \hspace{-3em}%
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<recently read> \quote@name 
                            
l.183 }
       \hspace{-3em}%
! Undefined control sequence.
<recently read> \quote@name 
                            
l.183 }
       \hspace{-3em}%
! LaTeX Error: File `plots/monitoringCounts-unitPlot1' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.188 }
       
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.188 }
       
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<recently read> \unquote@name 
                              
l.188 }
       
! Undefined control sequence.
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l.188 }
       
! Undefined control sequence.
<recently read> \quote@name 
                            
l.188 }
       
! LaTeX Error: File `plots/monitoringCounts-unitPlot2' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.257 ...graphics{plots/monitoringCounts-EARSPlot}
                                                  
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.257 ...graphics{plots/monitoringCounts-EARSPlot}
                                                  
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.257 ...graphics{plots/monitoringCounts-EARSPlot}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.257 ...graphics{plots/monitoringCounts-EARSPlot}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.257 ...graphics{plots/monitoringCounts-EARSPlot}
                                                  
! LaTeX Error: File `plots/monitoringCounts-EARSPlot' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.331 }
       
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.331 }
       
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<recently read> \unquote@name 
                              
l.331 }
       
! Undefined control sequence.
<recently read> \quote@name 
                            
l.331 }
       
! Undefined control sequence.
<recently read> \quote@name 
                            
l.331 }
       
! LaTeX Error: File `plots/monitoringCounts-fPlot1.pdf' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.335 }
       
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.335 }
       
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<recently read> \unquote@name 
                              
l.335 }
       
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<recently read> \quote@name 
                            
l.335 }
       
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<recently read> \quote@name 
                            
l.335 }
       
! LaTeX Error: File `plots/monitoringCounts-fPlot2.pdf' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.404 }
       
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.404 }
       
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<recently read> \unquote@name 
                              
l.404 }
       
! Undefined control sequence.
<recently read> \quote@name 
                            
l.404 }
       
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<recently read> \quote@name 
                            
l.404 }
       
! LaTeX Error: File `plots/monitoringCounts-farPlot1' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.410 }
       
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.410 }
       
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<recently read> \unquote@name 
                              
l.410 }
       
! Undefined control sequence.
<recently read> \quote@name 
                            
l.410 }
       
! Undefined control sequence.
<recently read> \quote@name 
                            
l.410 }
       
! LaTeX Error: File `plots/monitoringCounts-farPlot2' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                               
--- failed re-building ‘monitoringCounts.Rnw’

--- re-building ‘surveillance.Rnw’ using Sweave
Loading required package: sp
Loading required package: xtable
This is surveillance 1.17.1. For overview type ‘help(surveillance)’.
Doing computations: FALSE
Error: processing vignette 'surveillance.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'surveillance.tex' failed.
LaTeX errors:
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.145 \includegraphics{plots/surveillance-002}
                                              
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.145 \includegraphics{plots/surveillance-002}
                                              
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.145 \includegraphics{plots/surveillance-002}
                                              
! Undefined control sequence.
<recently read> \quote@name 
                            
l.145 \includegraphics{plots/surveillance-002}
                                              
! Undefined control sequence.
<recently read> \quote@name 
                            
l.145 \includegraphics{plots/surveillance-002}
                                              
! LaTeX Error: File `plots/surveillance-002' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.157 ...cs[width=.75\textwidth]{surveillance-hmm}
                                                  
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.157 ...cs[width=.75\textwidth]{surveillance-hmm}
                                                  
! Undefined control sequence.
<recently read> \unquote@name 
                              
l.157 ...cs[width=.75\textwidth]{surveillance-hmm}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.157 ...cs[width=.75\textwidth]{surveillance-hmm}
                                                  
! Undefined control sequence.
<recently read> \quote@name 
                            
l.157 ...cs[width=.75\textwidth]{surveillance-hmm}
                                                  
! LaTeX Error: File `surveillance-hmm' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Undefined control sequence.
\Ginclude@graphics ...\Ginput@path \set@curr@file 
                                                  {#1}\edef \uq@curr@file {\...
l.217 \includegraphics{plots/surveillance-004}
                                              
! Undefined control sequence.
\Ginclude@graphics ...e \expandafter {\@curr@file 
                                                  }}\expandafter \filename@p...
l.217 \includegraphics{plots/surveillance-004}
                                              
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l.217 \includegraphics{plots/surveillance-004}
                                              
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l.217 \includegraphics{plots/surveillance-004}
                                              
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l.217 \includegraphics{plots/surveillance-004}
                                              
! LaTeX Error: File `plots/surveillance-004' not found.

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Type  H <return>  for immediate help.
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l.316 \includegraphics{plots/surveillance-005}
                                              
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l.316 \includegraphics{plots/surveillance-005}
                                              
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l.316 \includegraphics{plots/surveillance-005}
                                              
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l.316 \includegraphics{plots/surveillance-005}
                                              
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l.316 \includegraphics{plots/surveillance-005}
                                              
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l.353 \includegraphics{plots/surveillance-008}
                                              
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l.353 \includegraphics{plots/surveillance-008}
                                              
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l.353 \includegraphics{plots/surveillance-008}
                                              
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l.353 \includegraphics{plots/surveillance-008}
                                              
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l.353 \includegraphics{plots/surveillance-008}
                                              
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l.566 ...egraphics{plots/surveillance-mapWeserEms}
                                                  
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                                                  }}\expandafter \filename@p...
l.566 ...egraphics{plots/surveillance-mapWeserEms}
                                                  
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l.566 ...egraphics{plots/surveillance-mapWeserEms}
                                                  
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l.566 ...egraphics{plots/surveillance-mapWeserEms}
                                                  
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l.566 ...egraphics{plots/surveillance-mapWeserEms}
                                                  
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l.581 \includegraphics{plots/surveillance-022}
                                              
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                                                  }}\expandafter \filename@p...
l.581 \includegraphics{plots/surveillance-022}
    
--- failed re-building ‘surveillance.Rnw’

--- re-building ‘hhh4_spacetime.Rnw’ using knitr
Loading required package: sp
Loading required package: xtable
This is surveillance 1.17.1. For overview type 'help(surveillance)'.
Doing computations: FALSE
Loading required namespace: spdep
Note: range of maximum neighbour order by region is 3-5
Error: processing vignette 'hhh4_spacetime.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'hhh4_spacetime.tex' failed.
LaTeX errors:
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l.292 ...plots/hhh4_spacetime-measlesWeserEms-1} }
                                                  \subfloat[Disease incidenc...
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                $
l.292 ...plots/hhh4_spacetime-measlesWeserEms-1} }
                                                  \subfloat[Disease incidenc...
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\Ginclude@graphics ...put@path \set@curr@file {#1}
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l.292 ...plots/hhh4_spacetime-measlesWeserEms-1} }
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                                                  }}\expandafter \filename@p...
l.292 ...plots/hhh4_spacetime-measlesWeserEms-1} }
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l.292 ...plots/hhh4_spacetime-measlesWeserEms-1} }
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l.292 ...plots/hhh4_spacetime-measlesWeserEms-1} }
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l.292 ...plots/hhh4_spacetime-measlesWeserEms-1} }
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l.292 ...plots/hhh4_spacetime-measlesWeserEms-1} }
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                }
l.292 ...plots/hhh4_spacetime-measlesWeserEms-1} }
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l.292 ...plots/hhh4_spacetime-measlesWeserEms-2} }
                                                  
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l.292 ...plots/hhh4_spacetime-measlesWeserEms-2} }
                                                  
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l.292 ...plots/hhh4_spacetime-measlesWeserEms-2} }
                                                  
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l.292 ...plots/hhh4_spacetime-measlesWeserEms-2} }
                                                  
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l.292 ...plots/hhh4_spacetime-measlesWeserEms-2} }
                                                  
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l.292 ...plots/hhh4_spacetime-measlesWeserEms-2} }
                                                  
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l.292 ...plots/hhh4_spacetime-measlesWeserEms-2} }
                                                  
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l.292 ...plots/hhh4_spacetime-measlesWeserEms-2} }
                                                  
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l.317 ...plots/hhh4_spacetime-measlesWeserEms15-1}
                                                  
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l.317 ...plots/hhh4_spacetime-measlesWeserEms15-1}
                                                  
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l.317 ...plots/hhh4_spacetime-measlesWeserEms15-1}
                                                  
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l.317 ...plots/hhh4_spacetime-measlesWeserEms15-1}
                                                  
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l.317 ...plots/hhh4_spacetime-measlesWeserEms15-1}
                                                  
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l.317 ...plots/hhh4_spacetime-measlesWeserEms15-1}
                                                  
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l.317 ...plots/hhh4_spacetime-measlesWeserEms15-1}
                                                  
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l.317 ...plots/hhh4_spacetime-measlesWeserEms15-1}
                                                  
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l.468 ...4_spacetime-measlesFit_basic_endseason-1}
                                                  
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l.468 ...4_spacetime-measlesFit_basic_endseason-1}
                                                  
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l.468 ...4_spacetime-measlesFit_basic_endseason-1}
                                                  
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l.468 ...4_spacetime-measlesFit_basic_endseason-1}
                                                  
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l.468 ...4_spacetime-measlesFit_basic_endseason-1}
                                                  
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l.468 ...4_spacetime-measlesFit_basic_endseason-1}
                                                  
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l.468 ...4_spacetime-measlesFit_basic_endseason-1}
                                                  
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nd.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate h
--- failed re-building ‘hhh4_spacetime.Rnw’

--- re-building ‘twinSIR.Rnw’ using knitr
Loading required package: sp
Loading required package: xtable
This is surveillance 1.17.1. For overview type 'help(surveillance)'.
Doing computations: FALSE
Warning in `[.epidata`(x, seq_len(n), , drop = FALSE) :
  dropped class "epidata": subsetting blocks not allowed
Initialized 1 log-baseline interval:  0.00 92.55
Initial parameter vector:  1 1 1 1 0
Computing OSAIC weights for 4 epidemic covariates based on 1000 simulations ...
Initialized 1 log-baseline interval:  0.00 92.55
Initial parameter vector:  1 1 1 1 1 1 0
Computing OSAIC weights for 4 epidemic covariates based on 1000 simulations ...
Error: processing vignette 'twinSIR.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'twinSIR.tex' failed.
LaTeX errors:
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l.367 ...egraphics{plots/twinSIR-hagelloch_plot-1}
                                                  
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l.367 ...egraphics{plots/twinSIR-hagelloch_plot-1}
                                                  
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l.367 ...egraphics{plots/twinSIR-hagelloch_plot-1}
                                                  
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l.367 ...egraphics{plots/twinSIR-hagelloch_plot-1}
                                                  
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l.367 ...egraphics{plots/twinSIR-hagelloch_plot-1}
                                                  
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l.367 ...egraphics{plots/twinSIR-hagelloch_plot-1}
                                                  
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l.367 ...egraphics{plots/twinSIR-hagelloch_plot-1}
                                                  
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l.367 ...egraphics{plots/twinSIR-hagelloch_plot-1}
                                                  
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l.385 ...ics{plots/twinSIR-hagelloch_households-1}
                                                  
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l.385 ...ics{plots/twinSIR-hagelloch_households-1}
                                                  
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l.385 ...ics{plots/twinSIR-hagelloch_households-1}
                                                  
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l.385 ...ics{plots/twinSIR-hagelloch_households-1}
                                                  
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l.385 ...ics{plots/twinSIR-hagelloch_households-1}
                                                  
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l.385 ...ics{plots/twinSIR-hagelloch_households-1}
                                                  
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l.522 ...lots/twinSIR-hagellochFit_profile_plot-1}
                                                  
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l.522 ...lots/twinSIR-hagellochFit_profile_plot-1}
                                                  
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l.522 ...lots/twinSIR-hagellochFit_profile_plot-1}
                                                  
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l.522 ...lots/twinSIR-hagellochFit_profile_plot-1}
                                                  
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l.522 ...lots/twinSIR-hagellochFit_profile_plot-1}
                                                  
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l.522 ...lots/twinSIR-hagellochFit_profile_plot-1}
                                                  
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l.574 ...dth]{plots/twinSIR-hagellochFit_plot-1} }
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l.574 ...dth]{plots/twinSIR-hagellochFit_plot-1} }
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l.574 ...dth]{plots/twinSIR-hagellochFit_plot-1} }
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l.574 ...dth]{plots/twinSIR-hagellochFit_plot-1} }
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Type  H <return>  for immediate help.
 ...                                              
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<inserted tex
--- failed re-building ‘twinSIR.Rnw’

--- re-building ‘twinstim.Rnw’ using knitr
Loading required package: sp
Loading required package: xtable
This is surveillance 1.17.1. For overview type 'help(surveillance)'.
Doing computations: FALSE
Loading required namespace: spdep
Note: auto-generated neighbourhood matrix contains 1 island
no epidemic component in model
Setting up the model environment ...
Loading required namespace: parallel
'imdfit_powerlaw' was fit with disabled 'cumCIF' -> calculate it now ...
Note: added the 'tau' component to object 'imdfit_powerlaw' for future use.
Error: processing vignette 'twinstim.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'twinstim.tex' failed.
LaTeX errors:
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l.624 ...graphics{plots/twinstim-imdepi_stepfun-1}
                                                  
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l.624 ...graphics{plots/twinstim-imdepi_stepfun-1}
                                                  
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l.624 ...graphics{plots/twinstim-imdepi_stepfun-1}
                                                  
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l.624 ...graphics{plots/twinstim-imdepi_stepfun-1}
                                                  
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l.624 ...graphics{plots/twinstim-imdepi_stepfun-1}
                                                  
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l.624 ...graphics{plots/twinstim-imdepi_stepfun-1}
                                                  
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l.624 ...graphics{plots/twinstim-imdepi_stepfun-1}
                                                  
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l.624 ...graphics{plots/twinstim-imdepi_stepfun-1}
                                                  
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l.643 ...inewidth]{plots/twinstim-imdepi_plot-1} }
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! LaTeX Error: File `plots/twinstim-imdepi_plot-2' not found.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
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                                                  \subfloat[Disease incidenc...
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l.729 ...inewidth]{plots/twinstim-imdsts_plot-1} }
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l.729 ...inewidth]{plots/twinstim-imdsts_plot-1} }
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l.729 ...inewidth]{plots/twinstim-imdsts_plot-1} }
                                                  \subfloat[Disease incidenc...
! LaTeX
--- failed re-building ‘twinstim.Rnw’

SUMMARY: processing the following files failed:
  ‘glrnb.Rnw’ ‘hhh4.Rnw’ ‘monitoringCounts.Rnw’ ‘surveillance.Rnw’
  ‘hhh4_spacetime.Rnw’ ‘twinSIR.Rnw’ ‘twinstim.Rnw’

Error: Vignette re-building failed.
Execution halted