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--- re-building ‘LDATS_codebase.Rmd’ using rmarkdown
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--- re-building ‘paper-comparison.Rmd’ using rmarkdown
trying URL ‘https://raw.githubusercontent.com/emchristensen/Extreme-events-LDA/master/rodent_LDA_analysis.r’
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trying URL ‘https://raw.githubusercontent.com/emchristensen/Extreme-events-LDA/master/rodent_data_for_LDA.r’
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trying URL ‘https://raw.githubusercontent.com/emchristensen/Extreme-events-LDA/master/AIC_model_selection.R’
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trying URL ‘https://raw.githubusercontent.com/emchristensen/Extreme-events-LDA/master/changepointmodel.r’
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trying URL ‘https://raw.githubusercontent.com/emchristensen/Extreme-events-LDA/master/LDA-distance.R’
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trying URL ‘https://raw.githubusercontent.com/emchristensen/Extreme-events-LDA/master/Rodent_table_dat.csv’
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trying URL ‘https://raw.githubusercontent.com/emchristensen/Extreme-events-LDA/master/LDA_figure_scripts.R’
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trying URL ‘https://raw.githubusercontent.com/weecology/PortalData/master/Rodents/moon_dates.csv’
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trying URL ‘https://raw.githubusercontent.com/weecology/PortalData/master/Rodents/Portal_rodent_trapping.csv’
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trying URL ‘https://raw.githubusercontent.com/weecology/LDATS-replications/master/model_outputs/ldats_ldamodel.RDS’
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trying URL ‘https://raw.githubusercontent.com/weecology/LDATS-replications/master/model_outputs/paper_ldamodel.RDS’
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trying URL ‘https://raw.githubusercontent.com/weecology/LDATS-replications/master/model_outputs/ldats_ldats.RDS’
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trying URL ‘https://raw.githubusercontent.com/weecology/LDATS-replications/master/model_outputs/ldats_paper.RDS’
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trying URL ‘https://raw.githubusercontent.com/weecology/LDATS-replications/master/model_outputs/paper_ldats.RDS’
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trying URL ‘https://raw.githubusercontent.com/weecology/LDATS-replications/master/model_outputs/paper_paper.RDS’
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trying URL ‘https://raw.githubusercontent.com/weecology/LDATS-replications/master/model_outputs/lda_distances.png’
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Error: processing vignette 'paper-comparison.Rmd' failed with diagnostics:
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--- failed re-building ‘paper-comparison.Rmd’

--- re-building ‘rodents-example.Rmd’ using rmarkdown
--- finished re-building ‘rodents-example.Rmd’

SUMMARY: processing the following file failed:
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Error: Vignette re-building failed.
Execution halted