Error(s) in re-building vignettes:
  ...
--- re-building ‘EstimatingIncidence.Rmd’ using rmarkdown
--- finished re-building ‘EstimatingIncidence.Rmd’

--- re-building ‘Introduction.Rmd’ using rmarkdown
--- finished re-building ‘Introduction.Rmd’

--- re-building ‘SurveyDesign.Rmd’ using rmarkdown
--- finished re-building ‘SurveyDesign.Rmd’

--- re-building ‘TestCalibration.Rmd’ using rmarkdown

 *** caught segfault ***
address 0x100000011, cause 'memory not mapped'

Traceback:
 1: sys.call(sys.parent())
 2: match.call(expand.dots = FALSE)
 3: glm2::glm2(formula = (1 - recency_status) ~ 1 + I(log(time_since_eddi)),     family = stats::binomial(link = "cloglog"), data = data,     control = stats::glm.control(epsilon = tolerance, maxit = maxit,         trace = FALSE))
 4: withCallingHandlers(expr, warning = function(w) invokeRestart("muffleWarning"))
 5: suppressWarnings(model <- glm2::glm2(formula = (1 - recency_status) ~     1 + I(log(time_since_eddi)), family = stats::binomial(link = "cloglog"),     data = data, control = stats::glm.control(epsilon = tolerance,         maxit = maxit, trace = FALSE)))
 6: fit_binomial_model(data = boot_data, functional_form = functional_form,     tolerance = tolerance_glm2, maxit = maxit_glm2)
 7: mdrical(data = excalibdata, subid_var = "SubjectID", time_var = "DaysSinceEDDI",     recency_cutoff_time = 730.5, inclusion_time_threshold = 800,     functional_forms = c("cloglog_linear"), recency_rule = "binary_data",     recency_vars = "Recent", n_bootstraps = 1000, alpha = 0.05,     plot = TRUE)
 8: eval(expr, envir, enclos)
 9: eval(expr, envir, enclos)
10: withVisible(eval(expr, envir, enclos))
11: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler,     error = eHandler, message = mHandler)
12: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir,     enclos)), warning = wHandler, error = eHandler, message = mHandler))
13: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr,     envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
14: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos,     debug = debug, last = i == length(out), use_try = stop_on_error !=         2L, keep_warning = keep_warning, keep_message = keep_message,     output_handler = output_handler, include_timing = include_timing)
15: evaluate::evaluate(...)
16: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning),     keep_message = !isFALSE(options$message), stop_on_error = if (options$error &&         options$include) 0L else 2L, output_handler = knit_handlers(options$render,         options))
17: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE,     keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message),     stop_on_error = if (options$error && options$include) 0L else 2L,     output_handler = knit_handlers(options$render, options)))
18: block_exec(params)
19: call_block(x)
20: process_group.block(group)
21: process_group(group)
22: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) {        setwd(wd)        cat(res, sep = "\n", file = output %n% "")        message("Quitting from lines ", paste(current_lines(i),             collapse = "-"), " (", knit_concord$get("infile"),             ") ")    })
23: process_file(text, output)
24: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet,     encoding = encoding)
25: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),     ...)
26: vweave_rmarkdown(...)
27: engine$weave(file, quiet = quiet, encoding = enc)
28: doTryCatch(return(expr), name, parentenv, handler)
29: tryCatchOne(expr, names, parentenv, handlers[[1L]])
30: tryCatchList(expr, classes, parentenv, handlers)
31: tryCatch({    engine$weave(file, quiet = quiet, encoding = enc)    setwd(startdir)    output <- find_vignette_product(name, by = "weave", engine = engine)    if (!have.makefile && vignette_is_tex(output)) {        texi2pdf(file = output, clean = FALSE, quiet = quiet)        output <- find_vignette_product(name, by = "texi2pdf",             engine = engine)    }}, error = function(e) {    OK <<- FALSE    message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",         file, conditionMessage(e)))})
32: tools:::.buildOneVignette("TestCalibration.Rmd", "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/inctools.Rcheck/vign_test/inctools",     TRUE, FALSE, "TestCalibration", "UTF-8", "/tmp/RtmpCgu7EV/file79971980fa08.rds")
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
SUMMARY: processing the following file failed:
  ‘TestCalibration.Rmd’

Error: Vignette re-building failed.
Execution halted