Found the following significant warnings:
  include/db/Transaction.hpp:15:16: warning: 'auto_ptr<db::Transaction>' is deprecated [-Wdeprecated-declarations]
  include/db/Connection.hpp:24:16: warning: 'auto_ptr<db::Connection>' is deprecated [-Wdeprecated-declarations]
  include/db/Connection.hpp:25:16: warning: 'auto_ptr<db::SQLStatement>' is deprecated [-Wdeprecated-declarations]
  include/db/Connection.hpp:27:10: warning: 'UniquePtr' is deprecated [-Wdeprecated-declarations]
  include/db/Connection.hpp:31:11: warning: 'StatementPtr' is deprecated [-Wdeprecated-declarations]
  include/db/Connection.hpp:36:24: warning: 'UniquePtr' is deprecated [-Wdeprecated-declarations]
  include/db/Connection.hpp:37:11: warning: 'ScopedTransactionPtr' is deprecated [-Wdeprecated-declarations]
  include/db/SQLite3Connection.hpp:35:3: warning: 'StatementPtr' is deprecated [-Wdeprecated-declarations]
  include/db/SQLite3Connection.hpp:55:3: warning: 'ScopedTransactionPtr' is deprecated [-Wdeprecated-declarations]
  include/db/SQLStatement.hpp:30:16: warning: 'auto_ptr<db::SQLStatement>' is deprecated [-Wdeprecated-declarations]
  include/genfile/bgen/IndexQuery.hpp:24:17: warning: 'auto_ptr<genfile::bgen::IndexQuery>' is deprecated [-Wdeprecated-declarations]
  include/genfile/bgen/IndexQuery.hpp:27:11: warning: 'UniquePtr' is deprecated [-Wdeprecated-declarations]
  include/genfile/bgen/IndexQuery.hpp:120:17: warning: 'auto_ptr<genfile::bgen::SqliteIndexQuery>' is deprecated [-Wdeprecated-declarations]
  include/genfile/bgen/IndexQuery.hpp:147:20: warning: 'UniquePtr' is deprecated [-Wdeprecated-declarations]
  include/genfile/bgen/IndexQuery.hpp:149:20: warning: 'StatementPtr' is deprecated [-Wdeprecated-declarations]
  include/genfile/bgen/IndexQuery.hpp:152:20: warning: 'UniquePtr' is deprecated [-Wdeprecated-declarations]
  include/genfile/bgen/View.hpp:30:17: warning: 'auto_ptr<genfile::bgen::View>' is deprecated [-Wdeprecated-declarations]
  include/genfile/bgen/View.hpp:34:11: warning: 'UniquePtr' is deprecated [-Wdeprecated-declarations]
  include/genfile/bgen/View.hpp:40:32: warning: 'UniquePtr' is deprecated [-Wdeprecated-declarations]
  include/genfile/bgen/View.hpp:124:9: warning: 'auto_ptr<std::basic_istream<char> >' is deprecated [-Wdeprecated-declarations]
  include/genfile/bgen/View.hpp:126:16: warning: 'UniquePtr' is deprecated [-Wdeprecated-declarations]
  Compute.cpp:2208:23: warning: 'UniquePtr' is deprecated [-Wdeprecated-declarations]
  bgen.cpp:501:15: warning: 'UniquePtr' is deprecated [-Wdeprecated-declarations]
  bgen.cpp:502:23: warning: 'UniquePtr' is deprecated [-Wdeprecated-declarations]
  bgen.cpp:519:20: warning: 'StatementPtr' is deprecated [-Wdeprecated-declarations]
  bgen.cpp:582:20: warning: 'StatementPtr' is deprecated [-Wdeprecated-declarations]
  bgen.cpp:597:20: warning: 'StatementPtr' is deprecated [-Wdeprecated-declarations]
  bgen.cpp:610:19: warning: 'UniquePtr' is deprecated [-Wdeprecated-declarations]
  bgen.cpp:611:20: warning: 'UniquePtr' is deprecated [-Wdeprecated-declarations]
  bgen.cpp:624:20: warning: 'StatementPtr' is deprecated [-Wdeprecated-declarations]
  bgen.cpp:627:21: warning: 'StatementPtr' is deprecated [-Wdeprecated-declarations]
  bgen.cpp:644:19: warning: 'StatementPtr' is deprecated [-Wdeprecated-declarations]
  bgen.cpp:709:9: warning: 'UniquePtr' is deprecated [-Wdeprecated-declarations]
  bgen.cpp:710:17: warning: 'UniquePtr' is deprecated [-Wdeprecated-declarations]
  bgen.cpp:728:37: warning: 'UniquePtr' is deprecated [-Wdeprecated-declarations]
  db_wrapper.cpp:12:14: warning: 'UniquePtr' is deprecated [-Wdeprecated-declarations]
  db_wrapper.cpp:13:22: warning: 'UniquePtr' is deprecated [-Wdeprecated-declarations]
  db_wrapper.cpp:124:21: warning: 'StatementPtr' is deprecated [-Wdeprecated-declarations]
  db_wrapper.cpp:125:10: warning: 'StatementPtr' is deprecated [-Wdeprecated-declarations]
  db_wrapper.cpp:207:21: warning: 'ScopedTransactionPtr' is deprecated [-Wdeprecated-declarations]
  db_wrapper.cpp:208:3: warning: 'ScopedTransactionPtr' is deprecated [-Wdeprecated-declarations]
See '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/OpenMx.Rcheck/00install.out' for details.