Error(s) in re-building vignettes:
--- re-building 'all_tables_examples.Rmd' using rmarkdown
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Setting levels: control = 0, case = 1
Setting direction: controls < cases
Setting levels: control = 0, case = 1
Setting direction: controls < cases
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Setting levels: control = 0, case = 1
Setting direction: controls < cases
Waiting for profiling to be done...
Setting levels: control = 0, case = 1
Setting direction: controls < cases
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
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Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
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Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
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Waiting for profiling to be done...
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Waiting for profiling to be done...
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Waiting for profiling to be done...
boundary (singular) fit: see ?isSingular
boundary (singular) fit: see ?isSingular
Warning in bind_rows_(x, .id) :
  binding factor and character vector, coercing into character vector
Warning in bind_rows_(x, .id) :
  binding character and factor vector, coercing into character vector
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Dependent is not a factor and will be treated as a continuous variable
Dependent is not a factor and will be treated as a continuous variable
P-value for lmer is estimate assuming t-distribution is normal. Bootstrap for final publication.
Dependent is not a factor and will be treated as a continuous variable
Warning in checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv,  :
  Model failed to converge with max|grad| = 0.00357214 (tol = 0.002, component 1)
P-value for lmer is estimate assuming t-distribution is normal. Bootstrap for final publication.
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Dependent is not a factor and will be treated as a continuous variable
Waiting for profiling to be done...
Dependent is not a factor and will be treated as a continuous variable
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Waiting for profiling to be done...
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Waiting for profiling to be done...
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Waiting for profiling to be done...
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Waiting for profiling to be done...
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Waiting for profiling to be done...
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Dependent variable is a survival object
Loading required package: grid
Loading required package: Matrix
Loading required package: survival

Attaching package: 'survey'

The following object is masked from 'package:graphics':

    dotchart

Dependent is not a factor and will be treated as a continuous variable
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
--- finished re-building 'all_tables_examples.Rmd'

--- re-building 'bootstrap.Rmd' using rmarkdown
--- finished re-building 'bootstrap.Rmd'

--- re-building 'data_prep.Rmd' using rmarkdown
--- finished re-building 'data_prep.Rmd'

--- re-building 'export.Rmd' using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
pandoc.exe: Could not fetch https://www.datasurg.net/wp-content/uploads/2018/05/example_or_plot.png
HttpExceptionRequest Request {
  host                 = "www.datasurg.net"
  port                 = 443
  secure               = True
  requestHeaders       = []
  path                 = "/wp-content/uploads/2018/05/example_or_plot.png"
  queryString          = ""
  method               = "GET"
  proxy                = Nothing
  rawBody              = False
  redirectCount        = 10
  responseTimeout      = ResponseTimeoutDefault
  requestVersion       = HTTP/1.1
}
 ResponseTimeout
Error: processing vignette 'export.Rmd' failed with diagnostics:
pandoc document conversion failed with error 67
--- failed re-building 'export.Rmd'

--- re-building 'finalfit.Rmd' using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Setting levels: control = 0, case = 1
Setting direction: controls < cases
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
--- finished re-building 'finalfit.Rmd'

--- re-building 'missing.Rmd' using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: lattice

Attaching package: 'mice'

The following objects are masked from 'package:base':

    cbind, rbind

Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in eval(family$initialize) :
  non-integer #successes in a quasibinomial glm!
Warning in bind_rows_(x, .id) :
  Vectorizing 'labelled' elements may not preserve their attributes
Warning in bind_rows_(x, .id) :
  Vectorizing 'labelled' elements may not preserve their attributes
Warning in bind_rows_(x, .id) :
  Vectorizing 'labelled' elements may not preserve their attributes
Warning in bind_rows_(x, .id) :
  Vectorizing 'labelled' elements may not preserve their attributes
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
--- finished re-building 'missing.Rmd'

--- re-building 'survival.Rmd' using rmarkdown
--- finished re-building 'survival.Rmd'

SUMMARY: processing the following file failed:
  'export.Rmd'

Error: Vignette re-building failed.
Execution halted