Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(sismonr)
  Warning message:
  In fun(libname, pkgname) :
    Error when checking the existing Julia version. Please check that Julia is correctly installed.
  > 
  > test_check("sismonr")
  sh: no:  not found
  ── 1. Error: creation of in silico population works (@test-in_silico_population.
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-in_silico_population.R:44
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-in_silico_population.R:11
  
  sh: no:  not found
  ── 2. Error: creation of one regulatory network works (@test-in_silico_system.R#
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-in_silico_system.R:36
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-in_silico_system.R:11
  
  sh: no:  not found
  ── 3. Error: creation of a multi-omic network works (@test-in_silico_system.R#45
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-in_silico_system.R:45
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-in_silico_system.R:11
  
  sh: no:  not found
  ── 4. Error: creation of an empty multi-omic network works (@test-in_silico_syst
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-in_silico_system.R:65
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-in_silico_system.R:11
  
  sh: no:  not found
  ── 5. Error: creation of an in silico system works (@test-in_silico_system.R#83)
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-in_silico_system.R:83
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-in_silico_system.R:11
  
  sh: no:  not found
  ── 6. Error: adding a gene works (@test-in_silico_system.R#92)  ────────────────
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-in_silico_system.R:92
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-in_silico_system.R:11
  
  sh: no:  not found
  ── 7. Error: adding a regulatory complex works (@test-in_silico_system.R#105)  ─
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-in_silico_system.R:105
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-in_silico_system.R:11
  
  sh: no:  not found
  ── 8. Error: removing a complex works (@test-in_silico_system.R#119)  ──────────
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-in_silico_system.R:119
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-in_silico_system.R:11
  
  sh: no:  not found
  ── 9. Error: adding an edge works (@test-in_silico_system.R#140)  ──────────────
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-in_silico_system.R:140
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-in_silico_system.R:11
  
  sh: no:  not found
  ── 10. Error: removing an edge works (@test-in_silico_system.R#153)  ───────────
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-in_silico_system.R:153
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-in_silico_system.R:11
  
  sh: no:  not found
  ── 11. Error: creation of a Julia evaluator works (@test-julia_evaluators.R#18) 
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-julia_evaluators.R:18
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-julia_evaluators.R:11
  
  sh: no:  not found
  ── 12. Error: using existing Julia evaluators works (@test-julia_evaluators.R#25
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-julia_evaluators.R:25
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-julia_evaluators.R:11
  
  sh: no:  not found
  ── 13. Error: closing a Julia evaluator works (@test-julia_evaluators.R#34)  ───
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-julia_evaluators.R:34
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-julia_evaluators.R:11
  
  sh: no:  not found
  ── 14. Error: creation of stochastic system from empty system works (@test-stoch
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-stochastic_simulation.R:19
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-stochastic_simulation.R:12
  
  sh: no:  not found
  ── 15. Error: creation of stochastic system for TC reaction works (@test-stochas
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-stochastic_simulation.R:45
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-stochastic_simulation.R:12
  
  sh: no:  not found
  ── 16. Error: creation of stochastic system for TL reaction works (@test-stochas
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-stochastic_simulation.R:63
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-stochastic_simulation.R:12
  
  sh: no:  not found
  ── 17. Error: creation of stochastic system for RD reaction works (@test-stochas
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-stochastic_simulation.R:82
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-stochastic_simulation.R:12
  
  sh: no:  not found
  ── 18. Error: creation of stochastic system for PD reaction works (@test-stochas
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-stochastic_simulation.R:98
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-stochastic_simulation.R:12
  
  sh: no:  not found
  ── 19. Error: creation of stochastic system for PTM reaction works (@test-stocha
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-stochastic_simulation.R:113
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-stochastic_simulation.R:12
  
  sh: no:  not found
  ── 20. Error: creation of stochastic system for regulatory complex works (@test-
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-stochastic_simulation.R:130
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-stochastic_simulation.R:12
  
  sh: no:  not found
  ── 21. Error: simulation of in silico system works (@test-stochastic_simulation.
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-stochastic_simulation.R:151
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-stochastic_simulation.R:12
  
  sh: no:  not found
  ── 22. Error: merging functions for simulation results works (@test-stochastic_s
  error in running command: 'Illegal seek'
  1: check_julia() at testthat/test-stochastic_simulation.R:162
  2: base::system(cmd, intern = T, ignore.stdout = F) at testthat/test-stochastic_simulation.R:12
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 27 SKIPPED: 0 WARNINGS: 0 FAILED: 22
  1. Error: creation of in silico population works (@test-in_silico_population.R#44) 
  2. Error: creation of one regulatory network works (@test-in_silico_system.R#36) 
  3. Error: creation of a multi-omic network works (@test-in_silico_system.R#45) 
  4. Error: creation of an empty multi-omic network works (@test-in_silico_system.R#65) 
  5. Error: creation of an in silico system works (@test-in_silico_system.R#83) 
  6. Error: adding a gene works (@test-in_silico_system.R#92) 
  7. Error: adding a regulatory complex works (@test-in_silico_system.R#105) 
  8. Error: removing a complex works (@test-in_silico_system.R#119) 
  9. Error: adding an edge works (@test-in_silico_system.R#140) 
  1. ...
  
  Error: testthat unit tests failed
  Execution halted