Running ‘testthat.R’ [53s/108s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(NACHO)
  > 
  > test_check("NACHO")
  
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74821/matrix/GSE74821_series_matrix.txt.gz'
  Content type 'application/x-gzip' length 488690 bytes (477 KB)
  ==================================================
  downloaded 477 KB
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74821/suppl//GSE74821_RAW.tar?tool=geoquery'
  Content type 'application/x-tar' length 2713600 bytes (2.6 MB)
  ==================================================
  downloaded 2.6 MB
  
  ── 1. Failure: missing sample sheet (@test-summarise.R#36)  ────────────────────
  `gse <- GEOquery::getGEO(GEO = "GSE74821")` did not throw an error.
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74821/suppl//GSE74821_RAW.tar?tool=geoquery'
  Content type 'application/x-tar' length 2713600 bytes (2.6 MB)
  ==================================================
  downloaded 2.6 MB
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74821/suppl//GSE74821_RAW.tar?tool=geoquery'
  Content type 'application/x-tar' length 2713600 bytes (2.6 MB)
  ==================================================
  downloaded 2.6 MB
  
  
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74821/suppl//GSE74821_RAW.tar?tool=geoquery'
  Content type 'application/x-tar' length 2713600 bytes (2.6 MB)
  ==================================================
  downloaded 2.6 MB
  
  
  
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74821/suppl//GSE74821_RAW.tar?tool=geoquery'
  Content type 'application/x-tar' length 2713600 bytes (2.6 MB)
  ==================================================
  downloaded 2.6 MB
  
  
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74821/suppl//GSE74821_RAW.tar?tool=geoquery'
  Content type 'application/x-tar' length 2713600 bytes (2.6 MB)
  ==================================================
  downloaded 2.6 MB
  
  
  
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE70nnn/GSE70970/matrix/GSE70970_series_matrix.txt.gz'
  Content type 'application/x-gzip' length 351607 bytes (343 KB)
  ==================================================
  downloaded 343 KB
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE70nnn/GSE70970/suppl//GSE70970_RAW.tar?tool=geoquery'
  Content type 'application/x-tar' length 1986560 bytes (1.9 MB)
  ==================================================
  downloaded 1.9 MB
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE70nnn/GSE70970/suppl//GSE70970_characteristics_readme.txt.gz?tool=geoquery'
  Content type 'application/x-gzip' length 672 bytes
  ==================================================
  downloaded 672 bytes
  
  
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE70nnn/GSE70970/suppl//GSE70970_RAW.tar?tool=geoquery'
  Content type 'application/x-tar' length 1986560 bytes (1.9 MB)
  ==================================================
  downloaded 1.9 MB
  
  trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE70nnn/GSE70970/suppl//GSE70970_characteristics_readme.txt.gz?tool=geoquery'
  Content type 'application/x-gzip' length 672 bytes
  ==================================================
  downloaded 672 bytes
  
  
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 38 SKIPPED: 0 WARNINGS: 0 FAILED: 1
  1. Failure: missing sample sheet (@test-summarise.R#36) 
  
  Error: testthat unit tests failed
  In addition: Warning message:
  In .Internal(gc(verbose, reset, full)) :
    closing unused connection 4 (https://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74821/matrix/)
  Execution halted