Running ‘testthat.R’ [65s/74s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(UCSCXenaTools)
  =========================================================================
  UCSCXenaTools version 1.2.3
  Github page: https://github.com/ShixiangWang/UCSCXenaTools
  Documentation: https://shixiangwang.github.io/UCSCXenaTools/
  
  If you use it in published research, please cite:
  Wang, Shixiang, et al. "The predictive power of tumor mutational burden
      in lung cancer immunotherapy response is influenced by patients' sex."
      International journal of cancer (2019).
  =========================================================================
                   
  > 
  > test_check("UCSCXenaTools")
  trying URL 'https://tcga.xenahubs.net/download/TCGA.LUAD.sampleMap/LUAD_clinicalMatrix.gz'
  Content type 'application/gzip' length 119655 bytes (116 KB)
  ==================================================
  downloaded 116 KB
  
  trying URL 'https://tcga.xenahubs.net/download/TCGA.LUSC.sampleMap/LUSC_clinicalMatrix.gz'
  Content type 'application/gzip' length 107369 bytes (104 KB)
  ==================================================
  downloaded 104 KB
  
  trying URL 'https://tcga.xenahubs.net/download/TCGA.LUAD.sampleMap/LUAD_clinicalMatrix.gz'
  Content type 'application/gzip' length 119655 bytes (116 KB)
  ==================================================
  downloaded 116 KB
  
  trying URL 'https://tcga.xenahubs.net/download/TCGA.LUSC.sampleMap/LUSC_clinicalMatrix.gz'
  Content type 'application/gzip' length 107369 bytes (104 KB)
  ==================================================
  downloaded 104 KB
  
  character(0)
  [1] "normalized"        "pancan normalized" "percentile"       
  [1] "27K"  "450K"
  trying URL 'https://tcga.xenahubs.net/download/TCGA.LUNG.sampleMap/LUNG_clinicalMatrix.gz'
  Content type 'application/gzip' length 192753 bytes (188 KB)
  ==================================================
  downloaded 188 KB
  
  trying URL 'https://tcga.xenahubs.net/download/TCGA.UVM.sampleMap/UVM_clinicalMatrix.gz'
  Content type 'application/gzip' length 14209 bytes (13 KB)
  ==================================================
  downloaded 13 KB
  
   [1] LAML     ACC      CHOL     BLCA     BRCA     CESC     COADREAD COAD    
   [9] UCEC     ESCA     FPPP     GBM      HNSC     KICH     KIRC     KIRP    
  [17] DLBC     LIHC     LGG      GBMLGG   LUAD     LUNG     LUSC     SKCM    
  [25] MESO     UVM      OV       PANCAN   PAAD     PCPG     PRAD     READ    
  [33] SARC     STAD     TGCT     THYM     THCA     UCS     
  ── 1. Error: (unknown) (@test-full-tests.R#5)  ─────────────────────────────────
  
    no hosts responding:
      https://tcga.xenahubs.net
  1: XenaHub(hostName = "tcgaHub") at testthat/test-full-tests.R:5
  2: stop("\n  no hosts responding:", "\n    ", paste0(hosts0, collapse = "\n  "))
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 7 SKIPPED: 0 WARNINGS: 0 FAILED: 1
  1. Error: (unknown) (@test-full-tests.R#5) 
  
  Error: testthat unit tests failed
  Execution halted