Running ‘testthat.R’ [15s/17s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(trialr)
  Loading required package: Rcpp
  > 
  > test_check("trialr")
  
  SAMPLING FOR MODEL 'ThallHierarchicalBinary' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 2.1e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.21 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.116812 seconds (Warm-up)
  Chain 1:                0.117539 seconds (Sampling)
  Chain 1:                0.234351 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'ThallHierarchicalBinary' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.8e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.18 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.121637 seconds (Warm-up)
  Chain 2:                0.12544 seconds (Sampling)
  Chain 2:                0.247077 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'ThallHierarchicalBinary' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 1.6e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds.
  Chain 3: Adjust your expectations accordingly!
  Chain 3: 
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.130529 seconds (Warm-up)
  Chain 3:                0.107694 seconds (Sampling)
  Chain 3:                0.238223 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'ThallHierarchicalBinary' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 3.1e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.31 seconds.
  Chain 4: Adjust your expectations accordingly!
  Chain 4: 
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.119379 seconds (Warm-up)
  Chain 4:                0.108077 seconds (Sampling)
  Chain 4:                0.227456 seconds (Total)
  Chain 4: 
  ── 1. Failure: Thall et al. Scenario 1 decisions are replicated (@test_hierarchi
  continue[1] isn't false.
  
  
  SAMPLING FOR MODEL 'BebopInPeps2' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 5e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.5 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.145834 seconds (Warm-up)
  Chain 1:                0.131555 seconds (Sampling)
  Chain 1:                0.277389 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'BebopInPeps2' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.4e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.153444 seconds (Warm-up)
  Chain 2:                0.13348 seconds (Sampling)
  Chain 2:                0.286924 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'BebopInPeps2' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 2.8e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.28 seconds.
  Chain 3: Adjust your expectations accordingly!
  Chain 3: 
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.15751 seconds (Warm-up)
  Chain 3:                0.143081 seconds (Sampling)
  Chain 3:                0.300591 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'BebopInPeps2' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 2.3e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.23 seconds.
  Chain 4: Adjust your expectations accordingly!
  Chain 4: 
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.152249 seconds (Warm-up)
  Chain 4:                0.131935 seconds (Sampling)
  Chain 4:                0.284184 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'BebopInPeps2' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 2.9e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.149861 seconds (Warm-up)
  Chain 1:                0.137609 seconds (Sampling)
  Chain 1:                0.28747 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'BebopInPeps2' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.1e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.21 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.148447 seconds (Warm-up)
  Chain 2:                0.130335 seconds (Sampling)
  Chain 2:                0.278782 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'BebopInPeps2' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 2e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.2 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.153387 seconds (Warm-up)
  Chain 3:                0.135209 seconds (Sampling)
  Chain 3:                0.288596 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'BebopInPeps2' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 2.1e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.21 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.147551 seconds (Warm-up)
  Chain 4:                0.131639 seconds (Sampling)
  Chain 4:                0.27919 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 1.8e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.18 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.010357 seconds (Warm-up)
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  Chain 1:                0.019956 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.2e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.12 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.011115 seconds (Warm-up)
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  Chain 2:                0.020537 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 1.7e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.17 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.031887 seconds (Warm-up)
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  Chain 1:                0.062472 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.2 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2:  Elapsed Time: 0.035133 seconds (Warm-up)
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  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 1.4e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.14 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3:                0.065326 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 1.7e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.17 seconds.
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  Chain 4:                0.061492 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 1.6e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 2: Gradient evaluation took 2.1e-05 seconds
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  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 3).
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  Chain 3: Gradient evaluation took 1.3e-05 seconds
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  Chain 4: Gradient evaluation took 1.4e-05 seconds
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  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 4.8e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.48 seconds.
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  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 3e-05 seconds
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  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 3.7e-05 seconds
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  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 3.6e-05 seconds
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  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
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  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
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  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 4.6e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.46 seconds.
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  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 3.3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.33 seconds.
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  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 4e-05 seconds
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  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 3.6e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.36 seconds.
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  Chain 4: 
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 317 SKIPPED: 0 WARNINGS: 0 FAILED: 1
  1. Failure: Thall et al. Scenario 1 decisions are replicated (@test_hierarchical.R#17) 
  
  Error: testthat unit tests failed
  Execution halted