Error(s) in re-building vignettes:
--- re-building ‘all_tables_examples.Rmd’ using rmarkdown
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
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boundary (singular) fit: see ?isSingular
boundary (singular) fit: see ?isSingular
Warning in bind_rows_(x, .id) :
  binding factor and character vector, coercing into character vector
Warning in bind_rows_(x, .id) :
  binding character and factor vector, coercing into character vector
Waiting for profiling to be done...
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Warning in extract_fit.lmerMod(.data = .data, explanatory_name = explanatory_name,  :
  P-value for lmer is estimate assuming t-distribution is normal. Bootstrap for final publication.
Warning in checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv,  :
  Model failed to converge with max|grad| = 0.00357214 (tol = 0.002, component 1)
Warning in extract_fit.lmerMod(.data = .data, explanatory_name = explanatory_name,  :
  P-value for lmer is estimate assuming t-distribution is normal. Bootstrap for final publication.
Waiting for profiling to be done...
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Warning in summary_factorlist(., dependent, c(base_explanatory, explanatory),  :
  Dependent variable is a survival object
--- finished re-building ‘all_tables_examples.Rmd’

--- re-building ‘bootstrap.Rmd’ using rmarkdown
--- finished re-building ‘bootstrap.Rmd’

--- re-building ‘data_prep.Rmd’ using rmarkdown
--- finished re-building ‘data_prep.Rmd’

--- re-building ‘export.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Waiting for profiling to be done...
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--- finished re-building ‘export.Rmd’

--- re-building ‘finalfit.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Warning in chisq.test(tab, correct = FALSE) :
  Chi-squared approximation may be incorrect
Waiting for profiling to be done...
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--- finished re-building ‘finalfit.Rmd’

--- re-building ‘missing.Rmd’ using rmarkdown

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: lattice

Attaching package: 'mice'

The following objects are masked from 'package:base':

    cbind, rbind

Quitting from lines 324-384 (missing.Rmd) 
Error: processing vignette 'missing.Rmd' failed with diagnostics:
cannot coerce type 'closure' to vector of type 'character'
--- failed re-building ‘missing.Rmd’

SUMMARY: processing the following file failed:
  ‘missing.Rmd’

Error: Vignette re-building failed.
Execution halted