Error(s) in re-building vignettes:
  ...
--- re-building ‘ctsem.rnw’ using knitr
Observations with missing time information found - removing 1 rows
Discrete time points created:  4
Extracting first non-missing value for time independent predictors
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
Running ctsemCarefulFit with 16 parameters

Beginning initial fit attempt

 Lowest minimum so far:  4345.73523485107

 OpenMx status code 6 not in list of acceptable status codes, (0,0)

 Not all eigenvalues of Hessian are greater than 0: 3023511921.63325, 985762.559254675, 194517.356501995, 119369.805920495, 2401.1966362348, 1583.229125255, 742.306279330214, 408.611885003262, 342.248055439184, 81.3720444922066, 72.7452849399017, 0.299602248306272, 0.0000000000155923273157787, -0.00000519051960979317, -0.0000828994221878997, -186.872693289277

Beginning fit attempt 1 of at maximum 15 extra tries

 Lowest minimum so far:  4345.62343112692

 OpenMx status code 6 not in list of acceptable status codes, (0,0)

 Not all eigenvalues of Hessian are greater than 0: 2879805859.95614, 929410.179451431, 191177.596309347, 111802.391926196, 2402.65379565996, 1302.65264757445, 797.878661654971, 357.054841928453, 337.12655136617, 81.2123498455379, 42.5268041750232, 13.806605756342, 0.00358600107318006, 0.0000773730543751615, -0.0000000610914986131095, -0.0161839627369992

Beginning fit attempt 2 of at maximum 15 extra tries

 Lowest minimum so far:  4344.83070359008

 OpenMx status code 6 not in list of acceptable status codes, (0,0)

 Not all eigenvalues of Hessian are greater than 0: 16772351828.3907, 5346924.39855901, 655203.304159892, 377676.896723956, 2397.14908014606, 1628.25305188246, 632.821313999668, 399.648692245983, 336.696256133501, 81.3633731414585, 47.3435531112939, 0.0910284645329307, 0.000247411351539814, 0.00000649672198597665, -0.000064212866236842, -41.8788941009217

Beginning fit attempt 3 of at maximum 15 extra tries

 Fit attempt worse than current best:  4345.45043536039 vs 4344.83070359008

Beginning fit attempt 4 of at maximum 15 extra tries

 Fit attempt worse than current best:  4392.88964606078 vs 4344.83070359008

Beginning fit attempt 5 of at maximum 15 extra tries

 Lowest minimum so far:  4199.24393776811

 Not all eigenvalues of Hessian are greater than 0: 46127.9922017385, 33543.3507089411, 2113.21805857348, 1058.87774738051, 389.786143424054, 331.932524577814, 266.166248847144, 203.210122623293, 112.75505310792, 97.6358728298047, 9.12300562980202, 4.6396455604237, 0.229211138976652, 0.197727541398117, 0.0000427375267719477, -0.000046226465575106

Beginning fit attempt 6 of at maximum 15 extra tries

 Lowest minimum so far:  4199.2439377446

Solution found


Solution found!  Final fit=4199.2439 (started at 4727.4693)  (7 attempt(s): 7 valid, 0 errors)

Running ctsemCarefulFit with 15 parameters

Beginning initial fit attempt

 Lowest minimum so far:  4196.73541494079

Solution found


Solution found!  Final fit=4196.7354 (started at 4882.1499)  (1 attempt(s): 1 valid, 0 errors)

NPSOL optimizer not available - switching to CSOLNP - consider installing OpenMx using command:  source('http://openmx.psyc.virginia.edu/getOpenMx.R') 
Running ctsem with 16 parameters
Running ctsemCarefulFit with 19 parameters

Beginning initial fit attempt

 Lowest minimum so far:  4151.13132113272

Solution found


Solution found!  Final fit=4151.1313 (started at 4301.6569)  (1 attempt(s): 1 valid, 0 errors)

Plotting fit
Plotting fit
Running ctsemCarefulFit with 23 parameters

Beginning initial fit attempt

 Lowest minimum so far:  4245.2570075148

Solution found


Solution found!  Final fit=4245.257 (started at 4370.0907)  (1 attempt(s): 1 valid, 0 errors)

MANIFESTMEANS contained character labels - setting matrix to 0
MANIFESTVAR contained character labels - setting matrix to diagonal 0.00001
TDPREDVAR contained character labels - setting matrix to 0
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
MANIFESTMEANS contained character labels - setting matrix to 0
MANIFESTVAR contained character labels - setting matrix to diagonal 0.00001
TDPREDVAR contained character labels - setting matrix to 0
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
MANIFESTMEANS contained character labels - setting matrix to 0
MANIFESTVAR contained character labels - setting matrix to diagonal 0.00001
TDPREDVAR contained character labels - setting matrix to 0
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
MANIFESTMEANS contained character labels - setting matrix to 0
MANIFESTVAR contained character labels - setting matrix to diagonal 0.00001
TDPREDVAR contained character labels - setting matrix to 0
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
No missing time dependent predictors - TDPREDVAR and TDPREDMEANS fixed to observed moments for speed
Running ctsemCarefulFit with 18 parameters

Beginning initial fit attempt

 Lowest minimum so far:  -486.477231290922

 Not all eigenvalues of Hessian are greater than 0: 3277.95975359584, 1424.191694353, 455.880744074048, 288.389133909092, 236.815914934097, 103.675754044103, 70.8800611502786, 38.5597344770233, 24.9152612047776, 18.0207252413803, 15.1221109661737, 13.3416165030496, 9.00893268195636, 4.89772055667928, 2.16333650446712, 0.00000489627132787852, 8.03870977372544e-21, -0.0000000000000685709521363931

Beginning fit attempt 1 of at maximum 15 extra tries

 Lowest minimum so far:  -486.477231290926

 Not all eigenvalues of Hessian are greater than 0: 3277.9616071971, 1424.19362482861, 455.885484153472, 288.391108093854, 236.817864936587, 103.683088282655, 70.8860046816607, 38.5610258586858, 24.9197315722645, 18.0202499065821, 15.1225219195671, 13.3411578161109, 9.01209122444888, 4.89734906060942, 2.16342859495058, 0.0000102327572300743, 0.0000000000000517359472744899, -5.57740815270779e-20

Beginning fit attempt 2 of at maximum 15 extra tries

 Not all eigenvalues of Hessian are greater than 0: 3277.9616071971, 1424.19362482861, 455.885484153472, 288.391108093854, 236.817864936587, 103.683088282655, 70.8860046816607, 38.5610258586858, 24.9197315722645, 18.0202499065821, 15.1225219195671, 13.3411578161109, 9.01209122444888, 4.89734906060942, 2.16342859495058, 0.0000102327572300743, 0.0000000000000517359472744899, -5.57740815270779e-20

Beginning fit attempt 3 of at maximum 15 extra tries

 Fit attempt generated errors

Beginning fit attempt 4 of at maximum 15 extra tries

 Not all eigenvalues of Hessian are greater than 0: 3277.96078130971, 1424.193854381, 455.881935623934, 288.393244052358, 236.819763090535, 103.679690890468, 70.8816842412565, 38.5589636438256, 24.9182458996903, 18.0216691002246, 15.1220715559323, 13.3433388741737, 9.0101386356559, 4.89782473306371, 2.16359812446936, 0.0000314824756794273, 0.0000197873080311996, -0.00000340608383308162

Beginning fit attempt 5 of at maximum 15 extra tries

 Fit attempt generated errors

Beginning fit attempt 6 of at maximum 15 extra tries

Solution found


Solution found!  Final fit=-486.47723 (started at -393.83023)  (7 attempt(s): 5 valid, 2 errors)

No missing time dependent predictors - TDPREDVAR and TDPREDMEANS fixed to observed moments for speed
transformedParams=TRUE and non positive DIFFUSION diagonal specified, setting to .00001.
Running ctsemCarefulFit with 18 parameters

Beginning initial fit attempt

 Lowest minimum so far:  -467.67311126947

Solution found


Solution found!  Final fit=-467.67311 (started at 90.085609)  (1 attempt(s): 1 valid, 0 errors)

Single subject dataset or Kalman objective specified - ignoring any specified between subject 
      variance matrices (TRAITVAR, T0TRAITEFFECT,MANIFESTTRAITVAR, TIPREDEFFECT, TIPREDVAR, TDTIPREDCOV, T0TIPREDEFFECT)
Running ctsemCarefulFit with 11 parameters

Beginning initial fit attempt

 Lowest minimum so far:  -138.198676577543

Solution found


Solution found!  Final fit=-138.19868 (started at 670.38459)  (1 attempt(s): 1 valid, 0 errors)

Begin carefulFit start value estimation for group g1
Begin carefulFit start value estimation for group g2

Beginning initial fit attempt

 Lowest minimum so far:  -137.70830291513

Solution found


Solution found!  Final fit=-137.7083 (started at 6209.2327)  (1 attempt(s): 1 valid, 0 errors)

T0VAR contained character labels - setting matrix to diagonal 0.00001
T0MEANS contained character labels - setting matrix to 0
MANIFESTMEANS contained character labels - setting matrix to 0
Discrete time points created:  200
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
Plotting rows 1, 
Single subject dataset or Kalman objective specified - ignoring any specified between subject 
      variance matrices (TRAITVAR, T0TRAITEFFECT,MANIFESTTRAITVAR, TIPREDEFFECT, TIPREDVAR, TDTIPREDCOV, T0TIPREDEFFECT)
transformedParams=TRUE and non positive DIFFUSION diagonal specified, setting to .00001.
Running ctsemCarefulFit with 7 parameters

Beginning initial fit attempt

 Lowest minimum so far:  757.080385463655

Solution found


Solution found!  Final fit=757.08039 (started at 1246.2697)  (1 attempt(s): 1 valid, 0 errors)

transformedParams=TRUE and non positive DIFFUSION diagonal specified, setting to .00001.

Beginning initial fit attempt
Killed