Running 'testthat.R' [20s/13s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(aLFQ)
  > 
  > 
  > test_check("aLFQ")
  -- 1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
  `x` not equal to `expected`.
  Component "r.squared": Mean relative difference: 0.008767804
  Component "mfe": Mean relative difference: 0.01016523
  
  -- 2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
  `x` not equal to `expected`.
  Component "r.squared": Mean relative difference: 0.1177339
  Component "mfe": Mean relative difference: 0.02141255
  
  -- 3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
  `x` not equal to `expected`.
  Component "r.squared": Mean relative difference: 0.1907404
  Component "mfe": Mean relative difference: 0.1210566
  
  -- 4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57
  `x` not equal to `expected`.
  Component "mfe": Mean relative difference: 0.03667919
  Component "r.squared": Mean relative difference: 0.007869293
  Component "calibration_covar": Mean relative difference: 0.03296972
  
  -- 5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58
  `x` not equal to `expected`.
  Component "mfe": Mean relative difference: 0.03667919
  Component "r.squared": Mean relative difference: 0.007869293
  Component "calibration_covar": Mean relative difference: 0.03296972
  
  -- 6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59
  `x` not equal to `expected`.
  Component "mfe": Mean relative difference: 0.05345315
  Component "r.squared": Mean relative difference: 0.005571031
  
  -- 7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60
  `x` not equal to `expected`.
  Component "mfe": Mean relative difference: 0.05345315
  Component "r.squared": Mean relative difference: 0.005571031
  
  -- 8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62
  `x` not equal to `expected`.
  84/84 mismatches (average diff: 54.8)
  [1]   1.890 -   1.535 ==    0.355
  [2]  68.017 - 145.936 ==  -77.919
  [3]   3.413 -   5.643 ==   -2.229
  [4] 319.335 - 435.817 == -116.482
  [5] 195.991 - 295.300 ==  -99.309
  [6]   0.903 -   0.684 ==    0.219
  [7] 518.271 - 178.206 ==  340.065
  [8]   0.577 -   0.419 ==    0.158
  [9]  36.472 -  39.140 ==   -2.668
  ...
  
  -- 9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69
  `x` not equal to `expected`.
  Component "mfe": Mean relative difference: 0.01968494
  Component "r.squared": Mean relative difference: 0.0116243
  Component "calibration_covar": Mean relative difference: 0.05099257
  
  -- 10. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
  `x` not equal to `expected`.
  Component "mfe": Mean relative difference: 0.01968494
  Component "r.squared": Mean relative difference: 0.0116243
  Component "calibration_covar": Mean relative difference: 0.05099257
  
  -- 11. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
  `x` not equal to `expected`.
  Component "mfe": Mean relative difference: 0.01512691
  Component "r.squared": Mean relative difference: 0.02429045
  
  -- 12. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
  `x` not equal to `expected`.
  Component "mfe": Mean relative difference: 0.01512691
  Component "r.squared": Mean relative difference: 0.02429045
  
  -- 13. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
  `x` not equal to `expected`.
  84/84 mismatches (average diff: 31.2)
  [1]   1.608 -   1.382 ==    0.226
  [2]  58.770 - 126.565 ==  -67.795
  [3]   5.225 -   5.028 ==    0.197
  [4] 287.076 - 374.544 ==  -87.468
  [5] 200.839 - 254.605 ==  -53.766
  [6]   0.766 -   0.620 ==    0.146
  [7] 451.707 - 611.235 == -159.528
  [8]   0.489 -   0.382 ==    0.107
  [9]  31.430 -  34.318 ==   -2.888
  ...
  
  -- 14. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
  `x` not equal to `expected`.
  Component "concentration": 38 string mismatches
  Component "response": Mean relative difference: 0.260616
  
  -- 15. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
  `x` not equal to `expected`.
  Component "concentration": 38 string mismatches
  Component "response": Mean relative difference: 0.3261007
  
  -- 16. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
  `x` not equal to `expected`.
  348/471 mismatches (average diff: 3192816)
  [2]     8299 -    19488 ==   -11188
  [5]  5627481 -  6015030 ==  -387550
  [6]   780238 -   627038 ==   153200
  [7]  5259533 - 11635245 == -6375712
  [8]   796256 -   736551 ==    59705
  [9]  1044268 -  1073336 ==   -29068
  [10] 3452488 - 11974505 == -8522017
  [11] 4008006 -  3786579 ==   221427
  [12]  193491 -   218246 ==   -24755
  ...
  
  -- 17. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
  `x` not equal to `expected`.
  352/475 mismatches (average diff: 3412242)
  [2]     8299 -    19488 ==   -11188
  [5]  5627481 -  6015030 ==  -387550
  [6]   780238 -   627038 ==   153200
  [7]  5259533 - 11635245 == -6375712
  [8]   796256 -   736551 ==    59705
  [9]  1044268 -  1073336 ==   -29068
  [10] 3452488 - 11974505 == -8522017
  [11] 4008006 -  3786579 ==   221427
  [12]  193491 -   218246 ==   -24755
  ...
  
  -- 18. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
  `x` not equal to `expected`.
  216/478 mismatches (average diff: 1530280)
  [5]  6732569 -  6991767 ==  -259198
  [7]  7113182 - 13113549 == -6000367
  [8]   891715 -   913342 ==   -21627
  [9]  1073336 -  1189364 ==  -116028
  [10] 6727435 - 11974505 == -5247070
  [13]   85455 -   106052 ==   -20597
  [14]   84111 -   104508 ==   -20397
  [15]   41091 -    80094 ==   -39003
  [16]  558927 -   568834 ==    -9907
  ...
  
  == testthat results  ===========================================================
  OK: 71 SKIPPED: 0 FAILED: 18
  1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#26) 
  2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#29) 
  3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#32) 
  4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57) 
  5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58) 
  6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59) 
  7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60) 
  8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62) 
  9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69) 
  1. ...
  
  Error: testthat unit tests failed
  Execution halted