Error(s) in re-building vignettes:
  ...
--- re-building ‘Custom_predict_for_survival_models.Rmd’ using knitr
Loading required package: Hmisc
Loading required package: lattice
Loading required package: survival

Attaching package: 'survival'

The following object is masked _by_ '.GlobalEnv':

    pbc

Loading required package: Formula
Loading required package: ggplot2

Attaching package: 'Hmisc'

The following objects are masked from 'package:base':

    format.pval, units

Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve

Loading required package: prodlim
Welcome to survxai (version: 0.2.0).
Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai

 randomForestSRC 2.8.0 
 
 Type rfsrc.news() to see new features, changes, and bug fixes. 
 


Attaching package: 'randomForestSRC'

The following object is masked from 'package:Hmisc':

    impute

--- finished re-building ‘Custom_predict_for_survival_models.Rmd’

--- re-building ‘Global_explanations.Rmd’ using knitr
Loading required package: Hmisc
Loading required package: lattice
Loading required package: survival

Attaching package: 'survival'

The following object is masked _by_ '.GlobalEnv':

    pbc

Loading required package: Formula
Loading required package: ggplot2

Attaching package: 'Hmisc'

The following objects are masked from 'package:base':

    format.pval, units

Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve

Loading required package: prodlim
Welcome to survxai (version: 0.2.0).
Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
No covariates  specified: Kaplan-Meier for censoring times used for weighting.
Quitting from lines 93-94 (Global_explanations.Rmd) 
Error: processing vignette 'Global_explanations.Rmd' failed with diagnostics:
VECTOR_ELT() can only be applied to a 'list', not a 'double'
--- failed re-building ‘Global_explanations.Rmd’

--- re-building ‘How_to_compare_models_with_survxai.Rmd’ using knitr
Loading required package: Hmisc
Loading required package: lattice
Loading required package: survival

Attaching package: 'survival'

The following object is masked _by_ '.GlobalEnv':

    pbc

Loading required package: Formula
Loading required package: ggplot2

Attaching package: 'Hmisc'

The following objects are masked from 'package:base':

    format.pval, units

Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve


 randomForestSRC 2.8.0 
 
 Type rfsrc.news() to see new features, changes, and bug fixes. 
 


Attaching package: 'randomForestSRC'

The following object is masked from 'package:Hmisc':

    impute

Loading required package: prodlim
Welcome to survxai (version: 0.2.0).
Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
Package: CFC, Version: 1.1.0
Cause-specific Framework for Competing-risk survival analysis
School of Public Heath, Imperial College London &
Scientific Computing Group, Sentrana Inc.
No covariates  specified: Kaplan-Meier for censoring times used for weighting.
No covariates  specified: Kaplan-Meier for censoring times used for weighting.
No covariates  specified: Kaplan-Meier for censoring times used for weighting.
No covariates  specified: Kaplan-Meier for censoring times used for weighting.
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  Recycling array of length 1 in vector-array arithmetic is deprecated.
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  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

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  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

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  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

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  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

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  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

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  Recycling array of length 1 in vector-array arithmetic is deprecated.
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  Recycling array of length 1 in vector-array arithmetic is deprecated.
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  Recycling array of length 1 in vector-array arithmetic is deprecated.
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  Recycling array of length 1 in vector-array arithmetic is deprecated.
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  Recycling array of length 1 in vector-array arithmetic is deprecated.
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  Recycling array of length 1 in vector-array arithmetic is deprecated.
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  Recycling array of length 1 in vector-array arithmetic is deprecated.
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  Recycling array of length 1 in vector-array arithmetic is deprecated.
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  Recycling array of length 1 in vector-array arithmetic is deprecated.
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  Recycling array of length 1 in vector-array arithmetic is deprecated.
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  Recycling array of length 1 in vector-array arithmetic is deprecated.
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  Recycling array of length 1 in vector-array arithmetic is deprecated.
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  Recycling array of length 1 in vector-array arithmetic is deprecated.
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  Recycling array of length 1 in vector-array arithmetic is deprecated.
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  Recycling array of length 1 in vector-array arithmetic is deprecated.
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  Recycling array of length 1 in vector-array arithmetic is deprecated.
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  Recycling array of length 1 in vector-array arithmetic is deprecated.
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Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

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  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

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  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Warning in mydist$trans(t) - t(args$coefficients) %*% c(args$x[n, ]) :
  Recycling array of length 1 in vector-array arithmetic is deprecated.
  Use c() or as.vector() instead.

Scale for 'y' is already present. Adding another scale for 'y', which
will replace the existing scale.
Quitting from lines 174-175 (How_to_compare_models_with_survxai.Rmd) 
Error: processing vignette 'How_to_compare_models_with_survxai.Rmd' failed with diagnostics:
VECTOR_ELT() can only be applied to a 'list', not a 'double'
--- failed re-building ‘How_to_compare_models_with_survxai.Rmd’

--- re-building ‘Local_explanations.Rmd’ using knitr
Loading required package: Hmisc
Loading required package: lattice
Loading required package: survival

Attaching package: 'survival'

The following object is masked _by_ '.GlobalEnv':

    pbc

Loading required package: Formula
Loading required package: ggplot2

Attaching package: 'Hmisc'

The following objects are masked from 'package:base':

    format.pval, units

Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve

Loading required package: prodlim
Welcome to survxai (version: 0.2.0).
Information about the package can be found in the GitHub repository: https://github.com/MI2DataLab/survxai
Quitting from lines 108-109 (Local_explanations.Rmd) 
Error: processing vignette 'Local_explanations.Rmd' failed with diagnostics:
VECTOR_ELT() can only be applied to a 'list', not a 'double'
--- failed re-building ‘Local_explanations.Rmd’

SUMMARY: processing the following files failed:
  ‘Global_explanations.Rmd’ ‘How_to_compare_models_with_survxai.Rmd’
  ‘Local_explanations.Rmd’

Error: Vignette re-building failed.
Execution halted