Error(s) in re-building vignettes:
  ...
--- re-building ‘Baseline-Vignette.Rmd’ using rmarkdown
Loading required package: ggplot2
Loading required package: stringi
Quitting from lines 278-292 (Baseline-Vignette.Rmd) 
Error: processing vignette 'Baseline-Vignette.Rmd' failed with diagnostics:
VECTOR_ELT() can only be applied to a 'list', not a 'double'
--- failed re-building ‘Baseline-Vignette.Rmd’

--- re-building ‘DistToNearest-Vignette.Rmd’ using rmarkdown
Loading required package: ggplot2
Loading required package: stringi
Quitting from lines 115-126 (DistToNearest-Vignette.Rmd) 
Error: processing vignette 'DistToNearest-Vignette.Rmd' failed with diagnostics:
VECTOR_ELT() can only be applied to a 'list', not a 'double'
--- failed re-building ‘DistToNearest-Vignette.Rmd’

--- re-building ‘Mutation-Vignette.Rmd’ using rmarkdown
Loading required package: ggplot2
Loading required package: stringi

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Quitting from lines 110-116 (Mutation-Vignette.Rmd) 
Error: processing vignette 'Mutation-Vignette.Rmd' failed with diagnostics:
VECTOR_ELT() can only be applied to a 'list', not a 'double'
--- failed re-building ‘Mutation-Vignette.Rmd’

--- re-building ‘Shmulate-Vignette.Rmd’ using rmarkdown
Loading required package: ggplot2
Loading required package: stringi

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

--- finished re-building ‘Shmulate-Vignette.Rmd’

--- re-building ‘Targeting-Vignette.Rmd’ using rmarkdown
Loading required package: ggplot2
Loading required package: stringi
Warning in createMutabilityMatrix(db, sub_mat, model = model, sequenceColumn = sequenceColumn,  :
  Insufficient number of mutations to infer some 5-mers. Filled with 0. 
Quitting from lines 125-128 (Targeting-Vignette.Rmd) 
Error: processing vignette 'Targeting-Vignette.Rmd' failed with diagnostics:
VECTOR_ELT() can only be applied to a 'list', not a 'double'
--- failed re-building ‘Targeting-Vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘Baseline-Vignette.Rmd’ ‘DistToNearest-Vignette.Rmd’
  ‘Mutation-Vignette.Rmd’ ‘Targeting-Vignette.Rmd’

Error: Vignette re-building failed.
Execution halted