Running examples in ‘survivALL-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotALL
> ### Title: Calculate and combine hazard ratio, pvalue, threshold and
> ###   area-between-curve data and plot
> ### Aliases: plotALL
> 
> ### ** Examples
> 
> data(nki_subset)
> library(Biobase)
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
    rownames, sapply, setdiff, sort, table, tapply, union, unique,
    unsplit, which, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

> 
> gene_vec <- exprs(nki_subset)["NM_004448", ] #ERBB2 gene id
> 
> plotALL(measure = gene_vec, 
+     srv = pData(nki_subset), 
+     time = "t.dmfs", 
+     event = "e.dmfs", 
+     title = "ERBB2 Example") 
Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in grid.Call.graphics(C_setviewport, vp, TRUE) : 
  VECTOR_ELT() can only be applied to a 'list', not a 'double'
Calls: <Anonymous> ... push.vp.vpTree -> push.vp -> push.vp.viewport -> grid.Call.graphics
In addition: Warning messages:
1: In fitter(X, Y, strats, offset, init, control, weights = weights,  :
  Loglik converged before variable  1 ; beta may be infinite. 
2: In min(x) : no non-missing arguments to min; returning Inf
3: In max(x) : no non-missing arguments to max; returning -Inf
4: Removed 319 rows containing missing values (geom_point). 
5: Removed 319 rows containing missing values (geom_tile). 
Execution halted