Error(s) in re-building vignettes:
  ...
--- re-building ‘InterpretingPOUMM.Rmd’ using rmarkdown
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--- re-building ‘UserGuide.Rmd’ using rmarkdown

Attaching package: 'ggplot2'

The following object is masked from 'package:POUMM':

    alpha

Loading required package: zoo

Attaching package: 'zoo'

The following objects are masked from 'package:base':

    as.Date, as.Date.numeric

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Warning in analyseMCMCs(object$fitMCMC$chains, stat = stats[[i]], statName = names(stats)[i],  :
  For  g0 calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

Warning in FUN(X[[i]], ...) : end value not changed
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Warning in analyseMCMCs(object$fitMCMC$chains, stat = NULL, statName = "loglik",  :
  For  loglik calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

Warning in FUN(X[[i]], ...) : end value not changed
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Warning in analyseMCMCs(object$fitMCMC$chains, stat = NULL, statName = "AIC",  :
  For  AIC calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

Warning in FUN(X[[i]], ...) : end value not changed
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Warning in analyseMCMCs(object$fitMCMC$chains, stat = NULL, statName = "AICc",  :
  For  AICc calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

Warning: Removed 540 rows containing non-finite values (stat_density).
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Warning: Removed 270 rows containing missing values (geom_point).
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  end value not changed
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  end value not changed
Warning in analyseMCMCs(object$fitMCMC$chains, stat = stats[[i]], statName = names(stats)[i],  :
  For  g0 calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

Warning in FUN(X[[i]], ...) : end value not changed
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Warning in analyseMCMCs(object$fitMCMC$chains, stat = NULL, statName = "loglik",  :
  For  loglik calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

Warning in FUN(X[[i]], ...) : end value not changed
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Warning in analyseMCMCs(object$fitMCMC$chains, stat = NULL, statName = "AIC",  :
  For  AIC calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

Warning in FUN(X[[i]], ...) : end value not changed
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Warning in analyseMCMCs(object$fitMCMC$chains, stat = NULL, statName = "AICc",  :
  For  AICc calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

Warning in FUN(X[[i]], ...) : end value not changed
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  end value not changed
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  end value not changed
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  end value not changed
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  end value not changed
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  end value not changed
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  end value not changed
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  end value not changed
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  end value not changed
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  end value not changed
Warning in analyseMCMCs(object$fitMCMC$chains, stat = stats[[i]], statName = names(stats)[i],  :
  For  g0 calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

Warning in FUN(X[[i]], ...) : end value not changed
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  end value not changed
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  end value not changed
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  end value not changed
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  end value not changed
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  end value not changed
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  end value not changed
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Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
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  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
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Warning in FUN(X[[i]], ...) : end value not changed
Warning in analyseMCMCs(object$fitMCMC$chains, stat = NULL, statName = "loglik",  :
  For  loglik calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

Warning in FUN(X[[i]], ...) : end value not changed
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Warning in analyseMCMCs(object$fitMCMC$chains, stat = NULL, statName = "AIC",  :
  For  AIC calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in analyseMCMCs(object$fitMCMC$chains, stat = NULL, statName = "AICc",  :
  For  AICc calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

Warning: Removed 2160 rows containing non-finite values (stat_density).
Warning: Removed 2160 rows containing missing values (geom_segment).
Warning: Removed 1080 rows containing missing values (geom_point).
Warning in FUN(X[[i]], ...) : end value not changed
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  end value not changed
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  end value not changed
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  end value not changed
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  end value not changed
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  end value not changed
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  end value not changed
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  end value not changed
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  end value not changed
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  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in analyseMCMCs(object$fitMCMC$chains, stat = stats[[i]], statName = names(stats)[i],  :
  For  g0 calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in analyseMCMCs(object$fitMCMC$chains, stat = NULL, statName = "loglik",  :
  For  loglik calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in analyseMCMCs(object$fitMCMC$chains, stat = NULL, statName = "AIC",  :
  For  AIC calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in analyseMCMCs(object$fitMCMC$chains, stat = NULL, statName = "AICc",  :
  For  AICc calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in analyseMCMCs(object$fitMCMC$chains, stat = stats[[i]], statName = names(stats)[i],  :
  For  g0 calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in window.mcmc(mc$mcmc, start = start, end = end, thin = thinMCMC) :
  end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in analyseMCMCs(object$fitMCMC$chains, stat = NULL, statName = "loglik",  :
  For  loglik calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in analyseMCMCs(object$fitMCMC$chains, stat = NULL, statName = "AIC",  :
  For  AIC calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in FUN(X[[i]], ...) : end value not changed
Warning in analyseMCMCs(object$fitMCMC$chains, stat = NULL, statName = "AICc",  :
  For  AICc calling coda::effectiveSize resulted in an error: Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 
  0 (non-NA) cases

--- finished re-building ‘UserGuide.Rmd’

SUMMARY: processing the following file failed:
  ‘InterpretingPOUMM.Rmd’

Error: Vignette re-building failed.
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