Running 'testthat.R' [24s/26s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(GMMAT)
  > Sys.setenv(MKL_NUM_THREADS = 1)
  > 
  > test_check("GMMAT")
  -- 1. Failure: cross-sectional id le 400 binomial (@test_SMMAT.R#18)  ----------
  signif(range(out1$B.pval)) not equal to signif(c(0.1540811, 0.9500619)).
  2/2 mismatches (average diff: 0.153)
  [1] 0.0657 - 0.154 == -0.0884
  [2] 0.7328 - 0.950 == -0.2173
  
  -- 2. Failure: cross-sectional id le 400 binomial (@test_SMMAT.R#19)  ----------
  signif(range(out1$E.pval)) not equal to signif(c(0.01675254, 0.76516832)).
  2/2 mismatches (average diff: 0.0636)
  [1] 0.0718 - 0.0168 == 0.0550
  [2] 0.8373 - 0.7652 == 0.0721
  
  -- 3. Failure: cross-sectional id le 400 binomial (@test_SMMAT.R#22)  ----------
  signif(range(out2$B.pval)) not equal to signif(c(0.1401707, 0.9730224)).
  2/2 mismatches (average diff: 0.118)
  [1] 0.0399 - 0.140 == -0.100
  [2] 0.8379 - 0.973 == -0.135
  
  -- 4. Failure: cross-sectional id le 400 binomial (@test_SMMAT.R#23)  ----------
  signif(range(out2$E.pval)) not equal to signif(c(0.01782418, 0.73027324)).
  2/2 mismatches (average diff: 0.0904)
  [1] 0.0317 - 0.0178 == 0.0138
  [2] 0.8971 - 0.7303 == 0.1669
  
  -- 5. Failure: cross-sectional id le 400 binomial (@test_glmm.score.R#45)  -----
  signif(range(obj1.gds.select.1$PVAL)) not equal to signif(c(0.003804942, 0.986534857)).
  2/2 mismatches (average diff: 0.00587)
  [1] 0.0086 - 0.0038 == 0.00479
  [2] 0.9935 - 0.9865 == 0.00694
  
  The following SNPs have been removed due to inconsistent alleles across studies:
  [1] "L10" "L12" "L15"
  == testthat results  ===========================================================
  OK: 11 SKIPPED: 28 FAILED: 5
  1. Failure: cross-sectional id le 400 binomial (@test_SMMAT.R#18) 
  2. Failure: cross-sectional id le 400 binomial (@test_SMMAT.R#19) 
  3. Failure: cross-sectional id le 400 binomial (@test_SMMAT.R#22) 
  4. Failure: cross-sectional id le 400 binomial (@test_SMMAT.R#23) 
  5. Failure: cross-sectional id le 400 binomial (@test_glmm.score.R#45) 
  
  Error: testthat unit tests failed
  Execution halted