Error(s) in re-building vignettes:
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--- re-building ‘DHARMa.Rmd’ using rmarkdown
Loading required package: Matrix
singular fit
singular fit
singular fit
singular fit
singular fit
singular fit
singular fit
singular fit
singular fit
singular fit
singular fit
singular fit
singular fit
singular fit
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singular fit
singular fit
It seems you are diagnosing a glmmTBM model. There are still a few minor limitations associatd with this package. The most important is that glmmTMB doesn't implement an option to create unconditional predictions from the model, which means that predicted values (in res ~ pred) plots include the random effects. With strong random effects, this can sometimes create diagonal patterns from bottom left to top right in the res ~ pred plot. All other tests and plots should work as desired. Please see https://github.com/florianhartig/DHARMa/issues/16 for further details.
singular fit
It seems you are diagnosing a glmmTBM model. There are still a few minor limitations associatd with this package. The most important is that glmmTMB doesn't implement an option to create unconditional predictions from the model, which means that predicted values (in res ~ pred) plots include the random effects. With strong random effects, this can sometimes create diagonal patterns from bottom left to top right in the res ~ pred plot. All other tests and plots should work as desired. Please see https://github.com/florianhartig/DHARMa/issues/16 for further details.
Model family was recognized or set as continuous, but duplicate values were detected in the response. Consider if you are fitting an appropriate model.
Model family was recognized or set as continuous, but duplicate values were detected in the simulation - changing to integer residuals (see ?simulateResiduals for details)
testOverdispersion is deprecated, switch your code to using the testDispersion function
It seems you are diagnosing a glmmTBM model. There are still a few minor limitations associatd with this package. The most important is that glmmTMB doesn't implement an option to create unconditional predictions from the model, which means that predicted values (in res ~ pred) plots include the random effects. With strong random effects, this can sometimes create diagonal patterns from bottom left to top right in the res ~ pred plot. All other tests and plots should work as desired. Please see https://github.com/florianhartig/DHARMa/issues/16 for further details.
It seems you are diagnosing a glmmTBM model. There are still a few minor limitations associatd with this package. The most important is that glmmTMB doesn't implement an option to create unconditional predictions from the model, which means that predicted values (in res ~ pred) plots include the random effects. With strong random effects, this can sometimes create diagonal patterns from bottom left to top right in the res ~ pred plot. All other tests and plots should work as desired. Please see https://github.com/florianhartig/DHARMa/issues/16 for further details.
File overdispersion.png not found in resource path
Error: processing vignette 'DHARMa.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building ‘DHARMa.Rmd’

SUMMARY: processing the following file failed:
  ‘DHARMa.Rmd’

Error: Vignette re-building failed.
Execution halted