Running ‘testthat.R’ [9s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(trialr)
  Loading required package: Rcpp
  > 
  > test_check("trialr")
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 3.2e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.32 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.010703 seconds (Warm-up)
  Chain 1:                0.007984 seconds (Sampling)
  Chain 1:                0.018687 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.6e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.011393 seconds (Warm-up)
  Chain 2:                0.009863 seconds (Sampling)
  Chain 2:                0.021256 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000128 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.28 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.033849 seconds (Warm-up)
  Chain 1:                0.027804 seconds (Sampling)
  Chain 1:                0.061653 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.036134 seconds (Warm-up)
  Chain 2:                0.035429 seconds (Sampling)
  Chain 2:                0.071563 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 1e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.030351 seconds (Warm-up)
  Chain 3:                0.035182 seconds (Sampling)
  Chain 3:                0.065533 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 9e-06 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds.
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.035274 seconds (Warm-up)
  Chain 4:                0.029198 seconds (Sampling)
  Chain 4:                0.064472 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 7.1e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.71 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.092478 seconds (Warm-up)
  Chain 1:                0.039101 seconds (Sampling)
  Chain 1:                0.131579 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.9e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.101476 seconds (Warm-up)
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  Chain 2:                0.147019 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 4.5e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.45 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.220863 seconds (Warm-up)
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  Chain 1:                0.367301 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.6e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.26 seconds.
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.248651 seconds (Warm-up)
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  Chain 2:                0.43599 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 3.6e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.36 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.244978 seconds (Warm-up)
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  Chain 3:                0.428443 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 4.1e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.41 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.248778 seconds (Warm-up)
  Chain 4:                0.187594 seconds (Sampling)
  Chain 4:                0.436372 seconds (Total)
  Chain 4: 
  ── 1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_st
  all(abs(mod$utility - c(-0.91, -0.47, 0.42, 0.64, 0.64)) < epsilon) isn't true.
  
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 5.8e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.58 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.227439 seconds (Warm-up)
  Chain 1:                0.189268 seconds (Sampling)
  Chain 1:                0.416707 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.3 seconds.
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.235852 seconds (Warm-up)
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  Chain 2:                0.403711 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 3e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.3 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.22938 seconds (Warm-up)
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  Chain 3:                0.396141 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 2.9e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.227738 seconds (Warm-up)
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  Chain 4:                0.40689 seconds (Total)
  Chain 4: 
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 180 SKIPPED: 0 FAILED: 1
  1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_stan_efftox.R#44) 
  
  Error: testthat unit tests failed
  Execution halted