Error(s) in re-building vignettes:
  ...
--- re-building ‘ctsem.rnw’ using knitr
Observations with missing time information found - removing 1 rows
Discrete time points created:  4
Extracting first non-missing value for time independent predictors
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
Running ctsemCarefulFit with 16 parameters

Beginning initial fit attempt

 Lowest minimum so far:  4345.86257632205

 OpenMx status code 6 not in list of acceptable status codes, (0,0)

 Not all eigenvalues of Hessian are greater than 0: 3311049125.22432, 1041696.60387923, 214305.512725886, 131985.095712239, 2405.65662920448, 1769.95653444597, 739.286500747171, 453.144793021724, 333.890562802462, 90.9674218772033, 80.8042405395784, 0.266912386115123, 0.00000551006615406393, -0.00000186479885700195, -0.000308845832050684, -370.423096548114

Beginning fit attempt 1 of at maximum 15 extra tries

 Lowest minimum so far:  4345.67885673806

 OpenMx status code 6 not in list of acceptable status codes, (0,0)

 Not all eigenvalues of Hessian are greater than 0: 2618047817.04154, 837167.043413461, 188690.838160515, 100154.892263763, 2406.6463572125, 1271.13777562244, 818.840020541056, 352.309610575625, 336.910679894538, 80.9945982532131, 49.3241960769404, 16.8978275087531, 0.00117383504586971, 0.0000481691551617197, 0.00000630535623986245, -0.155409814592485

Beginning fit attempt 2 of at maximum 15 extra tries

 Lowest minimum so far:  4344.85653907275

 OpenMx status code 6 not in list of acceptable status codes, (0,0)

 Not all eigenvalues of Hessian are greater than 0: 17038701402.6611, 5368656.73133398, 656536.388994895, 380554.155793236, 2396.50661057766, 1573.61116152958, 638.677128704107, 389.542887985698, 335.316002192624, 81.1566816953806, 44.4534173009722, 7.39914100031829, 0.0542374315205481, 0.00298124445836008, -0.000122247252460285, -0.000191552664981736

Beginning fit attempt 3 of at maximum 15 extra tries

 Fit attempt worse than current best:  4601.73308025476 vs 4344.85653907275

Beginning fit attempt 4 of at maximum 15 extra tries

 Fit attempt worse than current best:  4574.8590324841 vs 4344.85653907275

Beginning fit attempt 5 of at maximum 15 extra tries

 Lowest minimum so far:  4192.2947983328

 OpenMx status code 6 not in list of acceptable status codes, (0,0)

Beginning fit attempt 6 of at maximum 15 extra tries

 Lowest minimum so far:  4192.29441116291

 OpenMx status code 6 not in list of acceptable status codes, (0,0)

Beginning fit attempt 7 of at maximum 15 extra tries

 Lowest minimum so far:  4192.26366461216

 OpenMx status code 6 not in list of acceptable status codes, (0,0)

 Not all eigenvalues of Hessian are greater than 0: 625836055.269236, 81018763.6742807, 46361.9030738562, 9548.00488014118, 1619.55293403945, 1495.68075978127, 364.977031507008, 286.366796625077, 259.530016024719, 168.598144062121, 114.488460882015, 88.8898986783138, 49.3742744856584, 0.00498095669552536, 0.0000580459773729196, -0.000000971916921386466

Beginning fit attempt 8 of at maximum 15 extra tries

 Fit attempt worse than current best:  4727.62667671092 vs 4192.26366461216

Beginning fit attempt 9 of at maximum 15 extra tries

 Fit attempt worse than current best:  4865.47097947429 vs 4192.26366461216

Beginning fit attempt 10 of at maximum 15 extra tries

 Lowest minimum so far:  4182.94163747832

 OpenMx status code 6 not in list of acceptable status codes, (0,0)

Beginning fit attempt 11 of at maximum 15 extra tries

 Lowest minimum so far:  4182.94163723687

 OpenMx status code 6 not in list of acceptable status codes, (0,0)

Beginning fit attempt 12 of at maximum 15 extra tries

 Lowest minimum so far:  4182.84944360135

 OpenMx status code 6 not in list of acceptable status codes, (0,0)

 Not all eigenvalues of Hessian are greater than 0: 3338752461.75017, 583315497.234517, 37579.88424366, 9281.98672738018, 1371.21871600081, 1183.62891484916, 377.652888797401, 349.66852296476, 255.688659425226, 204.777373781073, 113.877555901117, 106.829980176956, 88.4263946462315, 41.6004413374527, 0.000421711289572595, -0.000000319884601454731

Beginning fit attempt 13 of at maximum 15 extra tries

 Fit attempt worse than current best:  4182.90477138925 vs 4182.84944360135

Beginning fit attempt 14 of at maximum 15 extra tries

 Fit attempt worse than current best:  4182.90032210653 vs 4182.84944360135

Beginning fit attempt 15 of at maximum 15 extra tries

 Fit attempt worse than current best:  33422.4841631746 vs 4182.84944360135

Retry limit reached

Retry limit reached; solution not found.  Best fit=4182.8494 (started at 4727.4693)  (16 attempt(s): 16 valid, 0 errors)


Uncertain solution found - consider parameter validity, try again, increase extraTries, change inits, change model, or check data!

Running ctsemCarefulFit with 15 parameters

Beginning initial fit attempt

 Lowest minimum so far:  4196.73541494078

Solution found


Solution found!  Final fit=4196.7354 (started at 4882.1501)  (1 attempt(s): 1 valid, 0 errors)

NPSOL optimizer not available - switching to CSOLNP - consider installing OpenMx using command:  source('http://openmx.psyc.virginia.edu/getOpenMx.R') 
Running ctsem with 16 parameters
Warning: In model 'ctsem' Optimizer returned a non-zero status code 6. The model does not satisfy the first-order optimality conditions to the required accuracy, and no improved point for the merit function could be found during the final linesearch (Mx status RED)
Running ctsemCarefulFit with 19 parameters

Beginning initial fit attempt

 Lowest minimum so far:  4151.13132113271

Solution found


Solution found!  Final fit=4151.1313 (started at 4301.6568)  (1 attempt(s): 1 valid, 0 errors)

Plotting fit
Plotting fit
Running ctsemCarefulFit with 23 parameters

Beginning initial fit attempt

 Lowest minimum so far:  4245.2570075149

Solution found


Solution found!  Final fit=4245.257 (started at 4370.0908)  (1 attempt(s): 1 valid, 0 errors)

MANIFESTMEANS contained character labels - setting matrix to 0
MANIFESTVAR contained character labels - setting matrix to diagonal 0.00001
TDPREDVAR contained character labels - setting matrix to diagonal 0.00001
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
MANIFESTMEANS contained character labels - setting matrix to 0
MANIFESTVAR contained character labels - setting matrix to diagonal 0.00001
TDPREDVAR contained character labels - setting matrix to diagonal 0.00001
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
MANIFESTMEANS contained character labels - setting matrix to 0
MANIFESTVAR contained character labels - setting matrix to diagonal 0.00001
TDPREDVAR contained character labels - setting matrix to diagonal 0.00001
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
MANIFESTMEANS contained character labels - setting matrix to 0
MANIFESTVAR contained character labels - setting matrix to diagonal 0.00001
TDPREDVAR contained character labels - setting matrix to diagonal 0.00001
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
No missing time dependent predictors - TDPREDVAR and TDPREDMEANS fixed to observed moments for speed
Running ctsemCarefulFit with 18 parameters

Beginning initial fit attempt

 Lowest minimum so far:  -477.756816533166

Solution found


Solution found!  Final fit=-477.75682 (started at -378.62728)  (1 attempt(s): 1 valid, 0 errors)

No missing time dependent predictors - TDPREDVAR and TDPREDMEANS fixed to observed moments for speed
transformedParams=TRUE and non positive DIFFUSION diagonal specified, setting to .00001.
Running ctsemCarefulFit with 18 parameters

Beginning initial fit attempt

 Lowest minimum so far:  -464.45189720933

 Not all eigenvalues of Hessian are greater than 0: 1555.73732751274, 696.888081707533, 119.47580511205, 34.6853297420144, 28.2661786119732, 26.4946545536491, 25.1637283204315, 11.7919401255018, 10.3800089229896, 7.51503312004016, 4.42599554958514, 2.1330961146387, 0.90219804168257, 0.481790830955707, 0.0572689503543451, 0.00345646043246331, 0.0000239211371344081, -0.0000115075539180561

Beginning fit attempt 1 of at maximum 15 extra tries

 Lowest minimum so far:  -464.451897214569

Solution found


Solution found!  Final fit=-464.4519 (started at 91.032871)  (2 attempt(s): 2 valid, 0 errors)

Single subject dataset or Kalman objective specified - ignoring any specified between subject 
      variance matrices (TRAITVAR, T0TRAITEFFECT,MANIFESTTRAITVAR, TIPREDEFFECT, TIPREDVAR, TDTIPREDCOV, T0TIPREDEFFECT)
Running ctsemCarefulFit with 11 parameters

Beginning initial fit attempt

 Lowest minimum so far:  -138.198676577264

Solution found


Solution found!  Final fit=-138.19868 (started at 670.38458)  (1 attempt(s): 1 valid, 0 errors)

Begin carefulFit start value estimation for group g1
Begin carefulFit start value estimation for group g2

Beginning initial fit attempt

 Lowest minimum so far:  -129.417753910738

Solution found


Solution found!  Final fit=-129.41775 (started at 6385.5734)  (1 attempt(s): 1 valid, 0 errors)

T0VAR contained character labels - setting matrix to diagonal 0.00001
T0MEANS contained character labels - setting matrix to 0
MANIFESTMEANS contained character labels - setting matrix to 0
Discrete time points created:  200
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
Plotting rows 1, 
Single subject dataset or Kalman objective specified - ignoring any specified between subject 
      variance matrices (TRAITVAR, T0TRAITEFFECT,MANIFESTTRAITVAR, TIPREDEFFECT, TIPREDVAR, TDTIPREDCOV, T0TIPREDEFFECT)
transformedParams=TRUE and non positive DIFFUSION diagonal specified, setting to .00001.
Running ctsemCarefulFit with 7 parameters

Beginning initial fit attempt

 Lowest minimum so far:  734.559496680369

Solution found


Solution found!  Final fit=734.5595 (started at 1245.5141)  (1 attempt(s): 1 valid, 0 errors)

transformedParams=TRUE and non positive DIFFUSION diagonal specified, setting to .00001.

Beginning initial fit attempt

 Lowest minimum so far:  -3462.15389492831

Solution found


Solution found!  Final fit=-3462.1539 (started at -3145.5663)  (1 attempt(s): 1 valid, 0 errors)

Running ctsemCarefulFit with 16 parameters

Beginning initial fit attempt

 Lowest minimum so far:  4345.80042566897

 OpenMx status code 6 not in list of acceptable status codes, (0,0)

 Not all eigenvalues of Hessian are greater than 0: 2797530735.86189, 942168.013390252, 190430.203819022, 116323.354091487, 2406.20513401938, 1567.5965795799, 747.620835819653, 416.04160858936, 338.363857960901, 81.9984646998796, 74.508210581129, 0.17516923894178, -0.0000474507860910557, -0.0000877285190659991, -0.000755799841649613, -172.845419651062

Beginning fit attempt 1 of at maximum 15 extra tries

 Lowest minimum so far:  4345.67742534029

 OpenMx status code 6 not in list of acceptable status codes, (0,0)

 Not all eigenvalues of Hessian are greater than 0: 2664970280.80583, 895943.200211433, 187195.369838031, 108914.229206819, 2402.44862340016, 1240.75179871985, 843.214364122878, 362.923769193723, 336.950751934997, 87.8961873777338, 81.3918661595573, 4.22678168713948, 0.000954417849069098, -0.0000412479644479814, -0.0000704475248668029, -2.33077467222463

Beginning fit attempt 2 of at maximum 15 extra tries

 Lowest minimum so far:  4344.97082338614

 OpenMx status code 6 not in list of acceptable status codes, (0,0)

 Not all eigenvalues of Hessian are greater than 0: 14173793019.0965, 3832194.11861145, 474889.446286017, 344441.595430301, 2396.95674427955, 1463.36542928768, 699.063940197222, 387.347750176315, 334.153460843244, 81.4703777324769, 65.0018408667777, 27.1051312427594, 0.0034577372998172, 0.0000667235321845871, -0.000753392873491946, -0.0102282339361983

Beginning fit attempt 3 of at maximum 15 extra tries

 Fit attempt worse than current best:  4347.34621942492 vs 4344.97082338614

Beginning fit attempt 4 of at maximum 15 extra tries

 Lowest minimum so far:  4176.87456133429

Solution found


Solution found!  Final fit=4176.8746 (started at 4727.4693)  (5 attempt(s): 5 valid, 0 errors)

Running ctsemCarefulFit with 19 parameters

Beginning initial fit attempt

 Lowest minimum so far:  4151.13132113271

Solution found


Solution found!  Final fit=4151.1313 (started at 4301.6567)  (1 attempt(s): 1 valid, 0 errors)

NPSOL optimizer not available - switching to CSOLNP - consider installing OpenMx using command:  source('http://openmx.psyc.virginia.edu/getOpenMx.R') 
Running ctsem with 19 parameters
Running ctsemCarefulFit with 19 parameters

Beginning initial fit attempt

 Lowest minimum so far:  4203.31303297246

 Not all eigenvalues of Hessian are greater than 0: 94313.725561503, 6623.16262442306, 1636.16701250111, 1127.62394964895, 726.811801294046, 621.795193372155, 294.431802773454, 198.915708199826, 180.032489067593, 115.665197148067, 91.1999304105221, 71.046969774319, 55.3337552002444, 26.045356735675, 9.29601829362489, 5.38036936558734, 4.03419723493502, 2.88403046784757, -0.0000118636982341065

Beginning fit attempt 1 of at maximum 15 extra tries

 Not all eigenvalues of Hessian are greater than 0: 94313.725561503, 6623.16262442306, 1636.16701250111, 1127.62394964895, 726.811801294046, 621.795193372155, 294.431802773454, 198.915708199826, 180.032489067593, 115.665197148067, 91.1999304105221, 71.046969774319, 55.3337552002444, 26.045356735675, 9.29601829362489, 5.38036936558734, 4.03419723493502, 2.88403046784757, -0.0000118636982341065

Beginning fit attempt 2 of at maximum 15 extra tries

 Fit attempt worse than current best:  4206.15742272025 vs 4203.31303297246

Beginning fit attempt 3 of at maximum 15 extra tries

 Fit attempt worse than current best:  4263.99127328494 vs 4203.31303297246

Beginning fit attempt 4 of at maximum 15 extra tries

 Lowest minimum so far:  4203.31303262956

 Not all eigenvalues of Hessian are greater than 0: 94314.1020577418, 6623.17870329296, 1636.16610705694, 1127.62254788299, 726.795332008526, 621.80160567408, 294.441577993583, 198.916916814052, 180.029285373746, 115.642812692212, 91.1942266013496, 71.0465396075011, 55.3306947419066, 26.0396349631213, 9.28618863994962, 5.37758436207964, 4.02879343875189, 2.88584119220764, -0.0000109346727969575

Beginning fit attempt 5 of at maximum 15 extra tries

 Not all eigenvalues of Hessian are greater than 0: 94314.1020577418, 6623.17870329296, 1636.16610705694, 1127.62254788299, 726.795332008526, 621.80160567408, 294.441577993583, 198.916916814052, 180.029285373746, 115.642812692212, 91.1942266013496, 71.0465396075011, 55.3306947419066, 26.0396349631213, 9.28618863994962, 5.37758436207964, 4.02879343875189, 2.88584119220764, -0.0000109346727969575

Beginning fit attempt 6 of at maximum 15 extra tries

 Fit attempt worse than current best:  4206.25957640419 vs 4203.31303262956

Beginning fit attempt 7 of at maximum 15 extra tries

 Fit attempt worse than current best:  4747.14993463876 vs 4203.31303262956

Beginning fit attempt 8 of at maximum 15 extra tries

 Fit attempt worse than current best:  4206.287335726 vs 4203.31303262956

Beginning fit attempt 9 of at maximum 15 extra tries

 Fit attempt worse than current best:  4217.65712989184 vs 4203.31303262956

Beginning fit attempt 10 of at maximum 15 extra tries

 Fit attempt worse than current best:  4215.98769418956 vs 4203.31303262956

Beginning fit attempt 11 of at maximum 15 extra tries

 Fit attempt worse than current best:  4263.99127328506 vs 4203.31303262956

Beginning fit attempt 12 of at maximum 15 extra tries

 Fit attempt worse than current best:  4226.76054650124 vs 4203.31303262956

Beginning fit attempt 13 of at maximum 15 extra tries

 Lowest minimum so far:  4203.31303215508

 Not all eigenvalues of Hessian are greater than 0: 94314.3094840541, 6623.17067996646, 1636.15534354814, 1127.63178515869, 726.79608589914, 621.790560986501, 294.422753420846, 198.913828482721, 180.024828699278, 115.649765775199, 91.1910661754233, 71.0407352934033, 55.3269445655557, 26.0397563458786, 9.27332604169298, 5.37478356985331, 4.01382882189171, 2.87699600502012, -0.000103455185866493

Beginning fit attempt 14 of at maximum 15 extra tries

 Lowest minimum so far:  4203.31303215508

Solution found


Solution found!  Final fit=4203.313 (started at 4349.5533)  (15 attempt(s): 15 valid, 0 errors)

NPSOL optimizer not available - switching to CSOLNP - consider installing OpenMx using command:  source('http://openmx.psyc.virginia.edu/getOpenMx.R') 
Running ctsem with 19 parameters
--- finished re-building ‘ctsem.rnw’

--- re-building ‘hierarchical.rnw’ using knitr
Quitting from lines 114-151 (hierarchical.rnw) 
Error: processing vignette 'hierarchical.rnw' failed with diagnostics:
object ‘knit_hooks’ not found
--- failed re-building ‘hierarchical.rnw’

SUMMARY: processing the following file failed:
  ‘hierarchical.rnw’

Error: Vignette re-building failed.
Execution halted