Running ‘testthat.R’ [8s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(trialr)
  Loading required package: Rcpp
  > 
  > test_check("trialr")
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 3e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.3 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.010428 seconds (Warm-up)
  Chain 1:                0.007966 seconds (Sampling)
  Chain 1:                0.018394 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.5e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.15 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.008958 seconds (Warm-up)
  Chain 2:                0.009343 seconds (Sampling)
  Chain 2:                0.018301 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000103 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.03 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.029023 seconds (Warm-up)
  Chain 1:                0.025532 seconds (Sampling)
  Chain 1:                0.054555 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.1e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.11 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.030392 seconds (Warm-up)
  Chain 2:                0.03407 seconds (Sampling)
  Chain 2:                0.064462 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 9e-06 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.031 seconds (Warm-up)
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  Chain 3:                0.061431 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 9e-06 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.031011 seconds (Warm-up)
  Chain 4:                0.029517 seconds (Sampling)
  Chain 4:                0.060528 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 4.1e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.41 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.094963 seconds (Warm-up)
  Chain 1:                0.037764 seconds (Sampling)
  Chain 1:                0.132727 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.4e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.10138 seconds (Warm-up)
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  Chain 2:                0.144418 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 3.6e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.36 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.236678 seconds (Warm-up)
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  Chain 1:                0.39931 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.23 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.259796 seconds (Warm-up)
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  Chain 2:                0.449784 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 3.3e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.33 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.23766 seconds (Warm-up)
  Chain 3:                0.170867 seconds (Sampling)
  Chain 3:                0.408527 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 2.9e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.232927 seconds (Warm-up)
  Chain 4:                0.186235 seconds (Sampling)
  Chain 4:                0.419162 seconds (Total)
  Chain 4: 
  ── 1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_st
  all(abs(mod$utility - c(-0.91, -0.47, 0.42, 0.64, 0.64)) < epsilon) isn't true.
  
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 5e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.5 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.229768 seconds (Warm-up)
  Chain 1:                0.187331 seconds (Sampling)
  Chain 1:                0.417099 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 3.5e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.35 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.236635 seconds (Warm-up)
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  Chain 2:                0.396974 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 3.2e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.32 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.219078 seconds (Warm-up)
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  Chain 3:                0.3935 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 2.7e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.27 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.241354 seconds (Warm-up)
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  Chain 4:                0.417905 seconds (Total)
  Chain 4: 
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 180 SKIPPED: 0 FAILED: 1
  1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_stan_efftox.R#44) 
  
  Error: testthat unit tests failed
  Execution halted