Running ‘testthat.R’ [9s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(trialr)
  Loading required package: Rcpp
  > 
  > test_check("trialr")
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 3.4e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.34 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.010867 seconds (Warm-up)
  Chain 1:                0.009838 seconds (Sampling)
  Chain 1:                0.020705 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.7e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.17 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.010487 seconds (Warm-up)
  Chain 2:                0.007753 seconds (Sampling)
  Chain 2:                0.01824 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000151 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.51 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.035946 seconds (Warm-up)
  Chain 1:                0.029494 seconds (Sampling)
  Chain 1:                0.06544 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.13 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.03455 seconds (Warm-up)
  Chain 2:                0.036384 seconds (Sampling)
  Chain 2:                0.070934 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 1.3e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.13 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.035024 seconds (Warm-up)
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  Chain 3:                0.069419 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 1e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.032238 seconds (Warm-up)
  Chain 4:                0.031515 seconds (Sampling)
  Chain 4:                0.063753 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 6.7e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.67 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.097078 seconds (Warm-up)
  Chain 1:                0.039919 seconds (Sampling)
  Chain 1:                0.136997 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.4e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.108493 seconds (Warm-up)
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  Chain 2:                0.15524 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 3.8e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.38 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1:  Elapsed Time: 0.242496 seconds (Warm-up)
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  Chain 1:                0.411097 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.23 seconds.
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.262074 seconds (Warm-up)
  Chain 2:                0.195089 seconds (Sampling)
  Chain 2:                0.457163 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 2.2e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.22 seconds.
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.236322 seconds (Warm-up)
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  Chain 3:                0.400536 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 2.4e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.246376 seconds (Warm-up)
  Chain 4:                0.188581 seconds (Sampling)
  Chain 4:                0.434957 seconds (Total)
  Chain 4: 
  ── 1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_st
  all(abs(mod$utility - c(-0.91, -0.47, 0.42, 0.64, 0.64)) < epsilon) isn't true.
  
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 5.2e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.52 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.240853 seconds (Warm-up)
  Chain 1:                0.193908 seconds (Sampling)
  Chain 1:                0.434761 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.9e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.241232 seconds (Warm-up)
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  Chain 2:                0.406943 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 2.4e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
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  Chain 3:  Elapsed Time: 0.211296 seconds (Warm-up)
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  Chain 3:                0.377735 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 3e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.3 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.238169 seconds (Warm-up)
  Chain 4:                0.188021 seconds (Sampling)
  Chain 4:                0.42619 seconds (Total)
  Chain 4: 
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 180 SKIPPED: 0 FAILED: 1
  1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_stan_efftox.R#44) 
  
  Error: testthat unit tests failed
  Execution halted