Running ‘testthat.R’ [9s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(trialr)
  Loading required package: Rcpp
  > 
  > test_check("trialr")
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 3.7e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.37 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.010353 seconds (Warm-up)
  Chain 1:                0.008314 seconds (Sampling)
  Chain 1:                0.018667 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.2e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.12 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.0101 seconds (Warm-up)
  Chain 2:                0.008748 seconds (Sampling)
  Chain 2:                0.018848 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 9.2e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.92 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.035706 seconds (Warm-up)
  Chain 1:                0.031033 seconds (Sampling)
  Chain 1:                0.066739 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.036452 seconds (Warm-up)
  Chain 2:                0.038576 seconds (Sampling)
  Chain 2:                0.075028 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 9e-06 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.033939 seconds (Warm-up)
  Chain 3:                0.035689 seconds (Sampling)
  Chain 3:                0.069628 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 1.2e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.12 seconds.
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.035091 seconds (Warm-up)
  Chain 4:                0.033256 seconds (Sampling)
  Chain 4:                0.068347 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 5.9e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.59 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.101798 seconds (Warm-up)
  Chain 1:                0.041552 seconds (Sampling)
  Chain 1:                0.14335 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.9e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.106521 seconds (Warm-up)
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  Chain 2:                0.154204 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 3.7e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.37 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.235853 seconds (Warm-up)
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  Chain 1:                0.40369 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.9e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
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  Chain 2:  Elapsed Time: 0.260059 seconds (Warm-up)
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  Chain 2:                0.449956 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 2.4e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.234428 seconds (Warm-up)
  Chain 3:                0.161372 seconds (Sampling)
  Chain 3:                0.3958 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 2.1e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.21 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.248503 seconds (Warm-up)
  Chain 4:                0.198403 seconds (Sampling)
  Chain 4:                0.446906 seconds (Total)
  Chain 4: 
  ── 1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_st
  all(abs(mod$utility - c(-0.91, -0.47, 0.42, 0.64, 0.64)) < epsilon) isn't true.
  
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 6.1e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.61 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.225081 seconds (Warm-up)
  Chain 1:                0.186478 seconds (Sampling)
  Chain 1:                0.411559 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.3 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.221509 seconds (Warm-up)
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  Chain 2:                0.402813 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 3e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.3 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.232612 seconds (Warm-up)
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  Chain 3:                0.415895 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 2.8e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.28 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.23959 seconds (Warm-up)
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  Chain 4:                0.425333 seconds (Total)
  Chain 4: 
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 180 SKIPPED: 0 FAILED: 1
  1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_stan_efftox.R#44) 
  
  Error: testthat unit tests failed
  Execution halted