Running ‘testthat.R’ [9s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(trialr)
  Loading required package: Rcpp
  > 
  > test_check("trialr")
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 2.9e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.010198 seconds (Warm-up)
  Chain 1:                0.00908 seconds (Sampling)
  Chain 1:                0.019278 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.01009 seconds (Warm-up)
  Chain 2:                0.008775 seconds (Sampling)
  Chain 2:                0.018865 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000133 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.33 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.033553 seconds (Warm-up)
  Chain 1:                0.031656 seconds (Sampling)
  Chain 1:                0.065209 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.13 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.035709 seconds (Warm-up)
  Chain 2:                0.037669 seconds (Sampling)
  Chain 2:                0.073378 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 9e-06 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.028529 seconds (Warm-up)
  Chain 3:                0.033616 seconds (Sampling)
  Chain 3:                0.062145 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 9e-06 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.031963 seconds (Warm-up)
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  Chain 4:                0.063664 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 6.5e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.65 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.100324 seconds (Warm-up)
  Chain 1:                0.038624 seconds (Sampling)
  Chain 1:                0.138948 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.23 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.101455 seconds (Warm-up)
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  Chain 2:                0.147894 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 3.8e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.38 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.249332 seconds (Warm-up)
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  Chain 1:                0.398724 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.2 seconds.
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.219711 seconds (Warm-up)
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  Chain 2:                0.386431 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 5.5e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.55 seconds.
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.25004 seconds (Warm-up)
  Chain 3:                0.179456 seconds (Sampling)
  Chain 3:                0.429496 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 3.8e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.38 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4:  Elapsed Time: 0.253602 seconds (Warm-up)
  Chain 4:                0.195379 seconds (Sampling)
  Chain 4:                0.448981 seconds (Total)
  Chain 4: 
  ── 1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_st
  all(abs(mod$utility - c(-0.91, -0.47, 0.42, 0.64, 0.64)) < epsilon) isn't true.
  
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 6e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.6 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.24105 seconds (Warm-up)
  Chain 1:                0.193869 seconds (Sampling)
  Chain 1:                0.434919 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.8e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.28 seconds.
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.240402 seconds (Warm-up)
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  Chain 2:                0.410614 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 2.5e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.25 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.233805 seconds (Warm-up)
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  Chain 3:                0.408925 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 4.4e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.44 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.239136 seconds (Warm-up)
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  Chain 4:                0.42152 seconds (Total)
  Chain 4: 
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 180 SKIPPED: 0 FAILED: 1
  1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_stan_efftox.R#44) 
  
  Error: testthat unit tests failed
  Execution halted