Running ‘testthat.R’ [9s/21s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(trialr)
  Loading required package: Rcpp
  > 
  > test_check("trialr")
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 3.8e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.38 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.010305 seconds (Warm-up)
  Chain 1:                0.009193 seconds (Sampling)
  Chain 1:                0.019498 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.1e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.11 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.010748 seconds (Warm-up)
  Chain 2:                0.009403 seconds (Sampling)
  Chain 2:                0.020151 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000124 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.24 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.034505 seconds (Warm-up)
  Chain 1:                0.030813 seconds (Sampling)
  Chain 1:                0.065318 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.13 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.036307 seconds (Warm-up)
  Chain 2:                0.035009 seconds (Sampling)
  Chain 2:                0.071316 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 1.1e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.11 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.033634 seconds (Warm-up)
  Chain 3:                0.034507 seconds (Sampling)
  Chain 3:                0.068141 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 1.3e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.13 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.035134 seconds (Warm-up)
  Chain 4:                0.033498 seconds (Sampling)
  Chain 4:                0.068632 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 7.8e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.78 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.100774 seconds (Warm-up)
  Chain 1:                0.040039 seconds (Sampling)
  Chain 1:                0.140813 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.3 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.110509 seconds (Warm-up)
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  Chain 2:                0.157291 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 4.7e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.47 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.235555 seconds (Warm-up)
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  Chain 1:                0.396192 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.8e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.28 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.253385 seconds (Warm-up)
  Chain 2:                0.189838 seconds (Sampling)
  Chain 2:                0.443223 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 4.2e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.42 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.237201 seconds (Warm-up)
  Chain 3:                0.172171 seconds (Sampling)
  Chain 3:                0.409372 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 2.3e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.23 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.253275 seconds (Warm-up)
  Chain 4:                0.182579 seconds (Sampling)
  Chain 4:                0.435854 seconds (Total)
  Chain 4: 
  ── 1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_st
  all(abs(mod$utility - c(-0.91, -0.47, 0.42, 0.64, 0.64)) < epsilon) isn't true.
  
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 4.3e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.43 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.23666 seconds (Warm-up)
  Chain 1:                0.188926 seconds (Sampling)
  Chain 1:                0.425586 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 3.9e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.39 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.235036 seconds (Warm-up)
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  Chain 2:                0.40435 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 3.2e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.32 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.224867 seconds (Warm-up)
  Chain 3:                0.179505 seconds (Sampling)
  Chain 3:                0.404372 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 3.3e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.33 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.23832 seconds (Warm-up)
  Chain 4:                0.176353 seconds (Sampling)
  Chain 4:                0.414673 seconds (Total)
  Chain 4: 
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 180 SKIPPED: 0 FAILED: 1
  1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_stan_efftox.R#44) 
  
  Error: testthat unit tests failed
  Execution halted