Running ‘crop.R’ [11s/17s]
  Comparing ‘crop.Rout’ to ‘crop.Rout.save’ ... OK
  Running ‘curvilinear.R’
  Comparing ‘curvilinear.Rout’ to ‘curvilinear.Rout.save’ ...4c4
< Linking to GEOS 3.6.3, GDAL 2.2.4, PROJ 5.1.0
---
> Linking to GEOS 3.6.2, GDAL 2.2.3, PROJ 4.9.3
45a46,90
> stars object with 2 dimensions and 1 attribute
> attribute(s):
>  nitrogendioxide_summed_total_column 
>  Min.   :0e+00                       
>  1st Qu.:1e-04                       
>  Median :1e-04                       
>  Mean   :1e-04                       
>  3rd Qu.:1e-04                       
>  Max.   :5e-04                       
>  NA's   :330                         
> dimension(s):
>   from  to offset delta                       refsys point
> x    1 450     NA    NA +proj=longlat +datum=WGS8...    NA
> y    1 278     NA    NA +proj=longlat +datum=WGS8...    NA
>                             values    
> x [450x278] -5.81066, ..., 30.9468 [x]
> y  [450x278] 28.3605, ..., 51.4686 [y]
> curvilinear grid
> stars object with 2 dimensions and 1 attribute
> attribute(s):
>  nitrogendioxide_summed_total_column 
>  Min.   :0.00005                     
>  1st Qu.:0.00007                     
>  Median :0.00008                     
>  Mean   :0.00009                     
>  3rd Qu.:0.00009                     
>  Max.   :0.00023                     
>  NA's   :36                          
> dimension(s):
>   from to offset delta                       refsys point
> x    1 57     NA    NA +proj=longlat +datum=WGS8...    NA
> y    1 35     NA    NA +proj=longlat +datum=WGS8...    NA
>                           values    
> x [57x35] -5.59621, ..., 30.8488 [x]
> y  [57x35] 28.3605, ..., 51.1544 [y]
> curvilinear grid
> null device 
>           1 
> Warning messages:
> 1: In get_raster(affine = pr$geotransform[c(3, 5)], dimensions = c("x",  :
>   setting NA affine values to zero
> 2: In get_raster(affine = pr$geotransform[c(3, 5)], dimensions = c("x",  :
>   setting NA affine values to zero
> 3: In get_raster(affine = pr$geotransform[c(3, 5)], dimensions = c("x",  :
>   setting NA affine values to zero
  Running ‘nc.R’
  Comparing ‘nc.Rout’ to ‘nc.Rout.save’ ...6c6
< Reading layer `nc.gpkg' from data source `/home/ripley/R/Lib32/sf/gpkg/nc.gpkg' using driver `GPKG'
---
> Reading layer `nc.gpkg' from data source `/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/sf/gpkg/nc.gpkg' using driver `GPKG'
233,240c233,240
<       sst            anom               err             ice       
<  Min.   :-1.80   Min.   :-10.160   Min.   :0.110   Min.   :0.010  
<  1st Qu.:-0.03   1st Qu.: -0.580   1st Qu.:0.160   1st Qu.:0.470  
<  Median :13.65   Median : -0.080   Median :0.270   Median :0.920  
<  Mean   :12.99   Mean   : -0.186   Mean   :0.263   Mean   :0.718  
<  3rd Qu.:24.81   3rd Qu.:  0.210   3rd Qu.:0.320   3rd Qu.:0.960  
<  Max.   :32.97   Max.   :  2.990   Max.   :0.840   Max.   :1.000  
<  NA's   :4448    NA's   :4448      NA's   :4448    NA's   :13266  
---
>      anom               err             ice             sst       
>  Min.   :-10.160   Min.   :0.110   Min.   :0.010   Min.   :-1.80  
>  1st Qu.: -0.580   1st Qu.:0.160   1st Qu.:0.470   1st Qu.:-0.03  
>  Median : -0.080   Median :0.270   Median :0.920   Median :13.65  
>  Mean   : -0.186   Mean   :0.263   Mean   :0.718   Mean   :12.99  
>  3rd Qu.:  0.210   3rd Qu.:0.320   3rd Qu.:0.960   3rd Qu.:24.81  
>  Max.   :  2.990   Max.   :0.840   Max.   :1.000   Max.   :32.97  
>  NA's   :4448      NA's   :4448    NA's   :13266   NA's   :4448   
267,274c267,274
<       sst             anom                err             ice        
<  Min.   :-1.390   Min.   :-1.07000   Min.   :0.300   Min.   :0.0100  
<  1st Qu.:-0.720   1st Qu.:-0.36250   1st Qu.:0.300   1st Qu.:0.1100  
<  Median :-0.515   Median : 0.19500   Median :0.300   Median :0.1700  
<  Mean   :-0.534   Mean   : 0.05867   Mean   :0.303   Mean   :0.2094  
<  3rd Qu.:-0.275   3rd Qu.: 0.55500   3rd Qu.:0.300   3rd Qu.:0.2550  
<  Max.   : 0.030   Max.   : 0.92000   Max.   :0.320   Max.   :0.5200  
<  NA's   :90       NA's   :90         NA's   :90      NA's   :104     
---
>      anom                err             ice              sst        
>  Min.   :-1.07000   Min.   :0.300   Min.   :0.0100   Min.   :-1.390  
>  1st Qu.:-0.36250   1st Qu.:0.300   1st Qu.:0.1100   1st Qu.:-0.720  
>  Median : 0.19500   Median :0.300   Median :0.1700   Median :-0.515  
>  Mean   : 0.05867   Mean   :0.303   Mean   :0.2094   Mean   :-0.534  
>  3rd Qu.: 0.55500   3rd Qu.:0.300   3rd Qu.:0.2550   3rd Qu.:-0.275  
>  Max.   : 0.92000   Max.   :0.320   Max.   :0.5200   Max.   : 0.030  
>  NA's   :90         NA's   :90      NA's   :104      NA's   :90      
  Running ‘proxy.R’ [10s/15s]
  Comparing ‘proxy.Rout’ to ‘proxy.Rout.save’ ...9c9
< [1] "/home/ripley/R/Lib32/stars/tif/L7_ETMs.tif"
---
> [1] "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif"
23c23
< [1] "/home/ripley/R/Lib32/stars/tif/L7_ETMs.tif"
---
> [1] "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif"
38c38
< [1] "/home/ripley/R/Lib32/stars/tif/L7_ETMs.tif"
---
> [1] "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif"
41c41
< [1] "/home/ripley/R/Lib32/stars/tif/L7_ETMs.tif"
---
> [1] "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif"
51c51
< "/home/ripley/R/Lib32/stars/tif/L7_ETMs.tif" 
---
> "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif" 
53c53
< "/home/ripley/R/Lib32/stars/tif/L7_ETMs.tif" 
---
> "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif" 
85c85
< [1] "/home/ripley/R/Lib32/stars/tif/L7_ETMs.tif"
---
> [1] "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif"
113c113
< [1] "/home/ripley/R/Lib32/stars/tif/L7_ETMs.tif"
---
> [1] "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif"
146c146
< [1] "/home/ripley/R/Lib32/stars/tif/L7_ETMs.tif"
---
> [1] "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif"
149c149
< [1] "/home/ripley/R/Lib32/stars/tif/L7_ETMs.tif"
---
> [1] "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif"
160c160
< [1] "/home/ripley/R/Lib32/stars/tif/L7_ETMs.tif"
---
> [1] "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif"
204a205,343
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> stars_proxy object with 2 attributes in files:
> $sst
>                                                                                 avhrr-only-v2.19810901.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810901.nc\":sst" 
>                                                                                 avhrr-only-v2.19810902.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810902.nc\":sst" 
>                                                                                 avhrr-only-v2.19810903.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810903.nc\":sst" 
>                                                                                 avhrr-only-v2.19810904.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810904.nc\":sst" 
>                                                                                 avhrr-only-v2.19810905.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810905.nc\":sst" 
>                                                                                 avhrr-only-v2.19810906.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810906.nc\":sst" 
>                                                                                 avhrr-only-v2.19810907.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810907.nc\":sst" 
>                                                                                 avhrr-only-v2.19810908.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810908.nc\":sst" 
>                                                                                 avhrr-only-v2.19810909.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810909.nc\":sst" 
> 
> $anom
>                                                                                  avhrr-only-v2.19810901.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810901.nc\":anom" 
>                                                                                  avhrr-only-v2.19810902.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810902.nc\":anom" 
>                                                                                  avhrr-only-v2.19810903.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810903.nc\":anom" 
>                                                                                  avhrr-only-v2.19810904.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810904.nc\":anom" 
>                                                                                  avhrr-only-v2.19810905.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810905.nc\":anom" 
>                                                                                  avhrr-only-v2.19810906.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810906.nc\":anom" 
>                                                                                  avhrr-only-v2.19810907.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810907.nc\":anom" 
>                                                                                  avhrr-only-v2.19810908.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810908.nc\":anom" 
>                                                                                  avhrr-only-v2.19810909.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810909.nc\":anom" 
> 
> dimension(s):
>      from   to     offset  delta  refsys point values    
> x       1 1440          0   0.25      NA    NA   NULL [x]
> y       1  720         90  -0.25      NA    NA   NULL [y]
> zlev    1    1      0 [m]     NA      NA    NA   NULL    
> time    1    9 1981-09-01 1 days POSIXct    NA   NULL    
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> stars object with 4 dimensions and 2 attributes
> attribute(s), summary of first 1e+05 cells:
>    sst [C*°]       anom [C*°]   
>  Min.   :-1.80   Min.   :-4.69  
>  1st Qu.:-1.19   1st Qu.:-0.06  
>  Median :-1.05   Median : 0.52  
>  Mean   :-0.32   Mean   : 0.23  
>  3rd Qu.:-0.20   3rd Qu.: 0.71  
>  Max.   : 9.36   Max.   : 3.70  
>  NA's   :13360   NA's   :13360  
> dimension(s):
>      from   to     offset  delta  refsys point values    
> x       1 1440          0   0.25      NA    NA   NULL [x]
> y       1  720         90  -0.25      NA    NA   NULL [y]
> zlev    1    1      0 [m]     NA      NA    NA   NULL    
> time    1    9 1981-09-01 1 days POSIXct    NA   NULL    
> stars object with 5 dimensions and 1 attribute
> attribute(s), summary of first 1e+05 cells:
>      attr       
>  Min.   :-1.80  
>  1st Qu.:-1.19  
>  Median :-1.05  
>  Mean   :-0.32  
>  3rd Qu.:-0.20  
>  Max.   : 9.36  
>  NA's   :13360  
> dimension(s):
>         from   to     offset  delta  refsys point     values    
> x          1 1440          0   0.25      NA    NA       NULL [x]
> y          1  720         90  -0.25      NA    NA       NULL [y]
> zlev       1    1      0 [m]     NA      NA    NA       NULL    
> time       1    9 1981-09-01 1 days POSIXct    NA       NULL    
> new_dim    1    2         NA     NA      NA    NA sst , anom    
> Error in c.stars_proxy(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") +  : 
>   for proxy ojbects, along argument is not implemented
> stars_proxy object with 2 attributes in files:
> $sst
> [1] "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810901.nc\":sst"
> [2] "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810902.nc\":sst"
> [3] "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810903.nc\":sst"
> 
> $anom
> [1] "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810901.nc\":anom"
> [2] "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810902.nc\":anom"
> [3] "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810903.nc\":anom"
> 
> dimension(s):
>       from   to     offset delta  refsys point values    
> x        1 1440          0  0.25      NA    NA   NULL [x]
> y        1  720         90 -0.25      NA    NA   NULL [y]
> zlev     1    1      0 [m]    NA      NA    NA   NULL    
> time     1    1 1981-09-01    NA POSIXct    NA   NULL    
> times    1    3         NA    NA      NA    NA   NULL    
> call list:
> [[1]]
> adrop(x = x)
> 
> [[2]]
> adrop(x = x)
> 
> stars_proxy object with 3 attributes in files:
>                                                                                                        sst 
>  "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810901.nc\":sst" 
>                                                                                                       anom 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810901.nc\":anom" 
>                                                                                                      along 
>                                                                                                        "5" 
> dimension(s):
>       from   to     offset  delta  refsys point values    
> x        1 1440          0   0.25      NA    NA   NULL [x]
> y        1  720         90  -0.25      NA    NA   NULL [y]
> zlev     1    1      0 [m]     NA      NA    NA   NULL    
> time     1    1 1981-09-01     NA POSIXct    NA   NULL    
> times    1    2 1981-09-01 1 days    Date    NA   NULL    
  Running ‘raster.R’ [7s/11s]
  Comparing ‘raster.Rout’ to ‘raster.Rout.save’ ... OK
  Running ‘rasterize.R’
  Comparing ‘rasterize.Rout’ to ‘rasterize.Rout.save’ ...4c4
< Linking to GEOS 3.6.3, GDAL 2.2.4, PROJ 5.1.0
---
> Linking to GEOS 3.6.2, GDAL 2.2.3, PROJ 4.9.3
6c6
< Reading layer `nc.gpkg' from data source `/home/ripley/R/Lib32/sf/gpkg/nc.gpkg' using driver `GPKG'
---
> Reading layer `nc.gpkg' from data source `/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/sf/gpkg/nc.gpkg' using driver `GPKG'
78c78
< "2.2.4" 
---
> "2.2.3" 
  Running ‘rectilinear.R’
  Comparing ‘rectilinear.Rout’ to ‘rectilinear.Rout.save’ ... OK
  Running ‘sf.R’
  Comparing ‘sf.Rout’ to ‘sf.Rout.save’ ... OK
  Running ‘spacetime.R’
  Running ‘stars.R’ [26s/31s]
  Comparing ‘stars.Rout’ to ‘stars.Rout.save’ ...442a443,497
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> stars object with 4 dimensions and 2 attributes
> attribute(s), summary of first 1e+05 cells:
>    sst [C*°]       anom [C*°]   
>  Min.   :-1.80   Min.   :-4.69  
>  1st Qu.:-1.19   1st Qu.:-0.06  
>  Median :-1.05   Median : 0.52  
>  Mean   :-0.32   Mean   : 0.23  
>  3rd Qu.:-0.20   3rd Qu.: 0.71  
>  Max.   : 9.36   Max.   : 3.70  
>  NA's   :13360   NA's   :13360  
> dimension(s):
>      from   to     offset  delta  refsys point values    
> x       1 1440          0   0.25      NA    NA   NULL [x]
> y       1  720         90  -0.25      NA    NA   NULL [y]
> zlev    1    1      0 [m]     NA      NA    NA   NULL    
> time    1    9 1981-09-01 1 days POSIXct    NA   NULL    
> stars object with 3 dimensions and 2 attributes
> attribute(s), summary of first 1e+05 cells:
>    sst [C*°]       anom [C*°]   
>  Min.   :-1.80   Min.   :-4.69  
>  1st Qu.:-1.19   1st Qu.:-0.06  
>  Median :-1.05   Median : 0.52  
>  Mean   :-0.32   Mean   : 0.23  
>  3rd Qu.:-0.20   3rd Qu.: 0.71  
>  Max.   : 9.36   Max.   : 3.70  
>  NA's   :13360   NA's   :13360  
> dimension(s):
>       from   to     offset  delta refsys point values    
> x        1 1440          0   0.25     NA    NA   NULL [x]
> y        1  720         90  -0.25     NA    NA   NULL [y]
> times    1    3 1981-09-01 1 days   Date    NA   NULL    
> stars object with 3 dimensions and 2 attributes
> attribute(s), summary of first 1e+05 cells:
>    sst [C*°]       anom [C*°]   
>  Min.   :-1.80   Min.   :-4.69  
>  1st Qu.:-1.19   1st Qu.:-0.06  
>  Median :-1.05   Median : 0.52  
>  Mean   :-0.32   Mean   : 0.23  
>  3rd Qu.:-0.20   3rd Qu.: 0.71  
>  Max.   : 9.36   Max.   : 3.70  
>  NA's   :13360   NA's   :13360  
> dimension(s):
>       from   to offset delta refsys point values    
> x        1 1440      0  0.25     NA    NA   NULL [x]
> y        1  720     90 -0.25     NA    NA   NULL [y]
> times    1    3     NA    NA     NA    NA   NULL    
  Running ‘testthat.R’
  Comparing ‘testthat.Rout’ to ‘testthat.Rout.save’ ...8c8
< Linking to GEOS 3.6.3, GDAL 2.2.4, PROJ 5.1.0
---
> Linking to GEOS 3.6.2, GDAL 2.2.3, PROJ 4.9.3
  Running ‘tidy.R’
  Comparing ‘tidy.Rout’ to ‘tidy.Rout.save’ ... OK
  Running ‘transform.R’
  Comparing ‘transform.Rout’ to ‘transform.Rout.save’ ... OK
  Running ‘warp.R’
  Comparing ‘warp.Rout’ to ‘warp.Rout.save’ ...4c4
< Linking to GEOS 3.6.3, GDAL 2.2.4, PROJ 5.1.0
---
> Linking to GEOS 3.6.2, GDAL 2.2.3, PROJ 4.9.3
  Running ‘write.R’
  Comparing ‘write.Rout’ to ‘write.Rout.save’ ... OK
Running the tests in ‘tests/spacetime.R’ failed.
Complete output:
  > suppressPackageStartupMessages(library(stars))
  Error: package or namespace load failed for 'stars' in library.dynam(lib, package, package.lib):
   shared object 'tibble.so' not found
  In addition: Warning message:
  S3 methods '$.tbl_df', '[.tbl_df', '[[.tbl_df', 'names<-.tbl_df', 'row.names<-.tbl_df', 'as.data.frame.tbl_df', 'as_tibble.NULL', 'as_tibble.data.frame', 'as_tibble.default', 'as_tibble.list', 'as_tibble.matrix', 'as_tibble.poly', 'as_tibble.table', 'as_tibble.ts', 'format.tbl', 'format.trunc_mat', 'format_v.character', 'format_v.default', 'format_v.factor', 'format_v.list', 'glimpse.data.frame', 'glimpse.default', 'glimpse.tbl', 'print.tbl', 'print.trunc_mat', 'quote_n.character', 'quote_n.default', 'tbl_sum.default', 'tbl_sum.tbl', 'type_sum.tbl_df' were declared in NAMESPACE but not found 
  Execution halted