Running ‘testthat.R’ [9s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(trialr)
  Loading required package: Rcpp
  > 
  > test_check("trialr")
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 2.3e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.23 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.00865 seconds (Warm-up)
  Chain 1:                0.009037 seconds (Sampling)
  Chain 1:                0.017687 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.2e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.12 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.010985 seconds (Warm-up)
  Chain 2:                0.009186 seconds (Sampling)
  Chain 2:                0.020171 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000121 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.21 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.032995 seconds (Warm-up)
  Chain 1:                0.029947 seconds (Sampling)
  Chain 1:                0.062942 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.033603 seconds (Warm-up)
  Chain 2:                0.035668 seconds (Sampling)
  Chain 2:                0.069271 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 1.1e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.11 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.03275 seconds (Warm-up)
  Chain 3:                0.034063 seconds (Sampling)
  Chain 3:                0.066813 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 1.5e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.15 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.0303 seconds (Warm-up)
  Chain 4:                0.03185 seconds (Sampling)
  Chain 4:                0.06215 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 4.9e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.49 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.101251 seconds (Warm-up)
  Chain 1:                0.040027 seconds (Sampling)
  Chain 1:                0.141278 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.4e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.109123 seconds (Warm-up)
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  Chain 2:                0.155705 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 4e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.4 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.235969 seconds (Warm-up)
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  Chain 1:                0.4028 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.3 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.269851 seconds (Warm-up)
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  Chain 2:                0.467862 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 2e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.2 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.258945 seconds (Warm-up)
  Chain 3:                0.177797 seconds (Sampling)
  Chain 3:                0.436742 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 2.5e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.25 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.237326 seconds (Warm-up)
  Chain 4:                0.183577 seconds (Sampling)
  Chain 4:                0.420903 seconds (Total)
  Chain 4: 
  ── 1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_st
  all(abs(mod$utility - c(-0.91, -0.47, 0.42, 0.64, 0.64)) < epsilon) isn't true.
  
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 4.4e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.44 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.248969 seconds (Warm-up)
  Chain 1:                0.198051 seconds (Sampling)
  Chain 1:                0.44702 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.6e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.26 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.252422 seconds (Warm-up)
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  Chain 2:                0.42844 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 3e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.3 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.235776 seconds (Warm-up)
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  Chain 3:                0.412761 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 3.1e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.31 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.244633 seconds (Warm-up)
  Chain 4:                0.181092 seconds (Sampling)
  Chain 4:                0.425725 seconds (Total)
  Chain 4: 
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 180 SKIPPED: 0 FAILED: 1
  1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_stan_efftox.R#44) 
  
  Error: testthat unit tests failed
  Execution halted