Running ‘crop.R’
  Comparing ‘crop.Rout’ to ‘crop.Rout.save’ ... OK
  Running ‘curvilinear.R’
  Comparing ‘curvilinear.Rout’ to ‘curvilinear.Rout.save’ ...4c4
< Linking to GEOS 3.6.1, GDAL 2.2.4, PROJ 4.9.3
---
> Linking to GEOS 3.6.2, GDAL 2.2.3, PROJ 4.9.3
45a46,90
> stars object with 2 dimensions and 1 attribute
> attribute(s):
>  nitrogendioxide_summed_total_column 
>  Min.   :0e+00                       
>  1st Qu.:1e-04                       
>  Median :1e-04                       
>  Mean   :1e-04                       
>  3rd Qu.:1e-04                       
>  Max.   :5e-04                       
>  NA's   :330                         
> dimension(s):
>   from  to offset delta                       refsys point
> x    1 450     NA    NA +proj=longlat +datum=WGS8...    NA
> y    1 278     NA    NA +proj=longlat +datum=WGS8...    NA
>                             values    
> x [450x278] -5.81066, ..., 30.9468 [x]
> y  [450x278] 28.3605, ..., 51.4686 [y]
> curvilinear grid
> stars object with 2 dimensions and 1 attribute
> attribute(s):
>  nitrogendioxide_summed_total_column 
>  Min.   :0.00005                     
>  1st Qu.:0.00007                     
>  Median :0.00008                     
>  Mean   :0.00009                     
>  3rd Qu.:0.00009                     
>  Max.   :0.00023                     
>  NA's   :36                          
> dimension(s):
>   from to offset delta                       refsys point
> x    1 57     NA    NA +proj=longlat +datum=WGS8...    NA
> y    1 35     NA    NA +proj=longlat +datum=WGS8...    NA
>                           values    
> x [57x35] -5.59621, ..., 30.8488 [x]
> y  [57x35] 28.3605, ..., 51.1544 [y]
> curvilinear grid
> null device 
>           1 
> Warning messages:
> 1: In get_raster(affine = pr$geotransform[c(3, 5)], dimensions = c("x",  :
>   setting NA affine values to zero
> 2: In get_raster(affine = pr$geotransform[c(3, 5)], dimensions = c("x",  :
>   setting NA affine values to zero
> 3: In get_raster(affine = pr$geotransform[c(3, 5)], dimensions = c("x",  :
>   setting NA affine values to zero
  Running ‘nc.R’
  Comparing ‘nc.Rout’ to ‘nc.Rout.save’ ...6c6
< Reading layer `nc.gpkg' from data source `/data/gannet/ripley/R/test-clang/sf/gpkg/nc.gpkg' using driver `GPKG'
---
> Reading layer `nc.gpkg' from data source `/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/sf/gpkg/nc.gpkg' using driver `GPKG'
233,240c233,240
<       sst            anom               err             ice       
<  Min.   :-1.80   Min.   :-10.160   Min.   :0.110   Min.   :0.010  
<  1st Qu.:-0.03   1st Qu.: -0.580   1st Qu.:0.160   1st Qu.:0.470  
<  Median :13.65   Median : -0.080   Median :0.270   Median :0.920  
<  Mean   :12.99   Mean   : -0.186   Mean   :0.263   Mean   :0.718  
<  3rd Qu.:24.81   3rd Qu.:  0.210   3rd Qu.:0.320   3rd Qu.:0.960  
<  Max.   :32.97   Max.   :  2.990   Max.   :0.840   Max.   :1.000  
<  NA's   :4448    NA's   :4448      NA's   :4448    NA's   :13266  
---
>      anom               err             ice             sst       
>  Min.   :-10.160   Min.   :0.110   Min.   :0.010   Min.   :-1.80  
>  1st Qu.: -0.580   1st Qu.:0.160   1st Qu.:0.470   1st Qu.:-0.03  
>  Median : -0.080   Median :0.270   Median :0.920   Median :13.65  
>  Mean   : -0.186   Mean   :0.263   Mean   :0.718   Mean   :12.99  
>  3rd Qu.:  0.210   3rd Qu.:0.320   3rd Qu.:0.960   3rd Qu.:24.81  
>  Max.   :  2.990   Max.   :0.840   Max.   :1.000   Max.   :32.97  
>  NA's   :4448      NA's   :4448    NA's   :13266   NA's   :4448   
267,274c267,274
<       sst             anom                err             ice        
<  Min.   :-1.390   Min.   :-1.07000   Min.   :0.300   Min.   :0.0100  
<  1st Qu.:-0.720   1st Qu.:-0.36250   1st Qu.:0.300   1st Qu.:0.1100  
<  Median :-0.515   Median : 0.19500   Median :0.300   Median :0.1700  
<  Mean   :-0.534   Mean   : 0.05867   Mean   :0.303   Mean   :0.2094  
<  3rd Qu.:-0.275   3rd Qu.: 0.55500   3rd Qu.:0.300   3rd Qu.:0.2550  
<  Max.   : 0.030   Max.   : 0.92000   Max.   :0.320   Max.   :0.5200  
<  NA's   :90       NA's   :90         NA's   :90      NA's   :104     
---
>      anom                err             ice              sst        
>  Min.   :-1.07000   Min.   :0.300   Min.   :0.0100   Min.   :-1.390  
>  1st Qu.:-0.36250   1st Qu.:0.300   1st Qu.:0.1100   1st Qu.:-0.720  
>  Median : 0.19500   Median :0.300   Median :0.1700   Median :-0.515  
>  Mean   : 0.05867   Mean   :0.303   Mean   :0.2094   Mean   :-0.534  
>  3rd Qu.: 0.55500   3rd Qu.:0.300   3rd Qu.:0.2550   3rd Qu.:-0.275  
>  Max.   : 0.92000   Max.   :0.320   Max.   :0.5200   Max.   : 0.030  
>  NA's   :90         NA's   :90      NA's   :104      NA's   :90      
  Running ‘proxy.R’
  Comparing ‘proxy.Rout’ to ‘proxy.Rout.save’ ...9c9
< [1] "/data/gannet/ripley/R/packages/tests-clang/stars.Rcheck/stars/tif/L7_ETMs.tif"
---
> [1] "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif"
23c23
< [1] "/data/gannet/ripley/R/packages/tests-clang/stars.Rcheck/stars/tif/L7_ETMs.tif"
---
> [1] "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif"
38c38
< [1] "/data/gannet/ripley/R/packages/tests-clang/stars.Rcheck/stars/tif/L7_ETMs.tif"
---
> [1] "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif"
41c41
< [1] "/data/gannet/ripley/R/packages/tests-clang/stars.Rcheck/stars/tif/L7_ETMs.tif"
---
> [1] "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif"
51c51
< "/data/gannet/ripley/R/packages/tests-clang/stars.Rcheck/stars/tif/L7_ETMs.tif" 
---
> "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif" 
53c53
< "/data/gannet/ripley/R/packages/tests-clang/stars.Rcheck/stars/tif/L7_ETMs.tif" 
---
> "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif" 
85c85
< [1] "/data/gannet/ripley/R/packages/tests-clang/stars.Rcheck/stars/tif/L7_ETMs.tif"
---
> [1] "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif"
113c113
< [1] "/data/gannet/ripley/R/packages/tests-clang/stars.Rcheck/stars/tif/L7_ETMs.tif"
---
> [1] "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif"
146c146
< [1] "/data/gannet/ripley/R/packages/tests-clang/stars.Rcheck/stars/tif/L7_ETMs.tif"
---
> [1] "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif"
149c149
< [1] "/data/gannet/ripley/R/packages/tests-clang/stars.Rcheck/stars/tif/L7_ETMs.tif"
---
> [1] "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif"
160c160
< [1] "/data/gannet/ripley/R/packages/tests-clang/stars.Rcheck/stars/tif/L7_ETMs.tif"
---
> [1] "/home/edzer/git/stars.Rcheck/stars/tif/L7_ETMs.tif"
204a205,343
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> stars_proxy object with 2 attributes in files:
> $sst
>                                                                                 avhrr-only-v2.19810901.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810901.nc\":sst" 
>                                                                                 avhrr-only-v2.19810902.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810902.nc\":sst" 
>                                                                                 avhrr-only-v2.19810903.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810903.nc\":sst" 
>                                                                                 avhrr-only-v2.19810904.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810904.nc\":sst" 
>                                                                                 avhrr-only-v2.19810905.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810905.nc\":sst" 
>                                                                                 avhrr-only-v2.19810906.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810906.nc\":sst" 
>                                                                                 avhrr-only-v2.19810907.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810907.nc\":sst" 
>                                                                                 avhrr-only-v2.19810908.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810908.nc\":sst" 
>                                                                                 avhrr-only-v2.19810909.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810909.nc\":sst" 
> 
> $anom
>                                                                                  avhrr-only-v2.19810901.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810901.nc\":anom" 
>                                                                                  avhrr-only-v2.19810902.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810902.nc\":anom" 
>                                                                                  avhrr-only-v2.19810903.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810903.nc\":anom" 
>                                                                                  avhrr-only-v2.19810904.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810904.nc\":anom" 
>                                                                                  avhrr-only-v2.19810905.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810905.nc\":anom" 
>                                                                                  avhrr-only-v2.19810906.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810906.nc\":anom" 
>                                                                                  avhrr-only-v2.19810907.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810907.nc\":anom" 
>                                                                                  avhrr-only-v2.19810908.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810908.nc\":anom" 
>                                                                                  avhrr-only-v2.19810909.nc 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810909.nc\":anom" 
> 
> dimension(s):
>      from   to     offset  delta  refsys point values    
> x       1 1440          0   0.25      NA    NA   NULL [x]
> y       1  720         90  -0.25      NA    NA   NULL [y]
> zlev    1    1      0 [m]     NA      NA    NA   NULL    
> time    1    9 1981-09-01 1 days POSIXct    NA   NULL    
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> stars object with 4 dimensions and 2 attributes
> attribute(s), summary of first 1e+05 cells:
>    sst [C*°]       anom [C*°]   
>  Min.   :-1.80   Min.   :-4.69  
>  1st Qu.:-1.19   1st Qu.:-0.06  
>  Median :-1.05   Median : 0.52  
>  Mean   :-0.32   Mean   : 0.23  
>  3rd Qu.:-0.20   3rd Qu.: 0.71  
>  Max.   : 9.36   Max.   : 3.70  
>  NA's   :13360   NA's   :13360  
> dimension(s):
>      from   to     offset  delta  refsys point values    
> x       1 1440          0   0.25      NA    NA   NULL [x]
> y       1  720         90  -0.25      NA    NA   NULL [y]
> zlev    1    1      0 [m]     NA      NA    NA   NULL    
> time    1    9 1981-09-01 1 days POSIXct    NA   NULL    
> stars object with 5 dimensions and 1 attribute
> attribute(s), summary of first 1e+05 cells:
>      attr       
>  Min.   :-1.80  
>  1st Qu.:-1.19  
>  Median :-1.05  
>  Mean   :-0.32  
>  3rd Qu.:-0.20  
>  Max.   : 9.36  
>  NA's   :13360  
> dimension(s):
>         from   to     offset  delta  refsys point     values    
> x          1 1440          0   0.25      NA    NA       NULL [x]
> y          1  720         90  -0.25      NA    NA       NULL [y]
> zlev       1    1      0 [m]     NA      NA    NA       NULL    
> time       1    9 1981-09-01 1 days POSIXct    NA       NULL    
> new_dim    1    2         NA     NA      NA    NA sst , anom    
> Error in c.stars_proxy(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") +  : 
>   for proxy ojbects, along argument is not implemented
> stars_proxy object with 2 attributes in files:
> $sst
> [1] "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810901.nc\":sst"
> [2] "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810902.nc\":sst"
> [3] "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810903.nc\":sst"
> 
> $anom
> [1] "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810901.nc\":anom"
> [2] "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810902.nc\":anom"
> [3] "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810903.nc\":anom"
> 
> dimension(s):
>       from   to     offset delta  refsys point values    
> x        1 1440          0  0.25      NA    NA   NULL [x]
> y        1  720         90 -0.25      NA    NA   NULL [y]
> zlev     1    1      0 [m]    NA      NA    NA   NULL    
> time     1    1 1981-09-01    NA POSIXct    NA   NULL    
> times    1    3         NA    NA      NA    NA   NULL    
> call list:
> [[1]]
> adrop(x = x)
> 
> [[2]]
> adrop(x = x)
> 
> stars_proxy object with 3 attributes in files:
>                                                                                                        sst 
>  "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810901.nc\":sst" 
>                                                                                                       anom 
> "NETCDF:\"/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/starsdata/netcdf/avhrr-only-v2.19810901.nc\":anom" 
>                                                                                                      along 
>                                                                                                        "5" 
> dimension(s):
>       from   to     offset  delta  refsys point values    
> x        1 1440          0   0.25      NA    NA   NULL [x]
> y        1  720         90  -0.25      NA    NA   NULL [y]
> zlev     1    1      0 [m]     NA      NA    NA   NULL    
> time     1    1 1981-09-01     NA POSIXct    NA   NULL    
> times    1    2 1981-09-01 1 days    Date    NA   NULL    
  Running ‘raster.R’
  Comparing ‘raster.Rout’ to ‘raster.Rout.save’ ... OK
  Running ‘rasterize.R’
  Comparing ‘rasterize.Rout’ to ‘rasterize.Rout.save’ ...4c4
< Linking to GEOS 3.6.1, GDAL 2.2.4, PROJ 4.9.3
---
> Linking to GEOS 3.6.2, GDAL 2.2.3, PROJ 4.9.3
6c6
< Reading layer `nc.gpkg' from data source `/data/gannet/ripley/R/test-clang/sf/gpkg/nc.gpkg' using driver `GPKG'
---
> Reading layer `nc.gpkg' from data source `/home/edzer/R/x86_64-pc-linux-gnu-library/3.5/sf/gpkg/nc.gpkg' using driver `GPKG'
78c78
< "2.2.4" 
---
> "2.2.3" 
  Running ‘rectilinear.R’
  Comparing ‘rectilinear.Rout’ to ‘rectilinear.Rout.save’ ... OK
  Running ‘sf.R’
  Comparing ‘sf.Rout’ to ‘sf.Rout.save’ ... OK
  Running ‘spacetime.R’
  Comparing ‘spacetime.Rout’ to ‘spacetime.Rout.save’ ... OK
  Running ‘stars.R’ [13s/13s]
  Comparing ‘stars.Rout’ to ‘stars.Rout.save’ ...442a443,497
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> sst, anom, 
> stars object with 4 dimensions and 2 attributes
> attribute(s), summary of first 1e+05 cells:
>    sst [C*°]       anom [C*°]   
>  Min.   :-1.80   Min.   :-4.69  
>  1st Qu.:-1.19   1st Qu.:-0.06  
>  Median :-1.05   Median : 0.52  
>  Mean   :-0.32   Mean   : 0.23  
>  3rd Qu.:-0.20   3rd Qu.: 0.71  
>  Max.   : 9.36   Max.   : 3.70  
>  NA's   :13360   NA's   :13360  
> dimension(s):
>      from   to     offset  delta  refsys point values    
> x       1 1440          0   0.25      NA    NA   NULL [x]
> y       1  720         90  -0.25      NA    NA   NULL [y]
> zlev    1    1      0 [m]     NA      NA    NA   NULL    
> time    1    9 1981-09-01 1 days POSIXct    NA   NULL    
> stars object with 3 dimensions and 2 attributes
> attribute(s), summary of first 1e+05 cells:
>    sst [C*°]       anom [C*°]   
>  Min.   :-1.80   Min.   :-4.69  
>  1st Qu.:-1.19   1st Qu.:-0.06  
>  Median :-1.05   Median : 0.52  
>  Mean   :-0.32   Mean   : 0.23  
>  3rd Qu.:-0.20   3rd Qu.: 0.71  
>  Max.   : 9.36   Max.   : 3.70  
>  NA's   :13360   NA's   :13360  
> dimension(s):
>       from   to     offset  delta refsys point values    
> x        1 1440          0   0.25     NA    NA   NULL [x]
> y        1  720         90  -0.25     NA    NA   NULL [y]
> times    1    3 1981-09-01 1 days   Date    NA   NULL    
> stars object with 3 dimensions and 2 attributes
> attribute(s), summary of first 1e+05 cells:
>    sst [C*°]       anom [C*°]   
>  Min.   :-1.80   Min.   :-4.69  
>  1st Qu.:-1.19   1st Qu.:-0.06  
>  Median :-1.05   Median : 0.52  
>  Mean   :-0.32   Mean   : 0.23  
>  3rd Qu.:-0.20   3rd Qu.: 0.71  
>  Max.   : 9.36   Max.   : 3.70  
>  NA's   :13360   NA's   :13360  
> dimension(s):
>       from   to offset delta refsys point values    
> x        1 1440      0  0.25     NA    NA   NULL [x]
> y        1  720     90 -0.25     NA    NA   NULL [y]
> times    1    3     NA    NA     NA    NA   NULL    
  Running ‘testthat.R’
  Running ‘tidy.R’
  Comparing ‘tidy.Rout’ to ‘tidy.Rout.save’ ... OK
  Running ‘transform.R’
  Comparing ‘transform.Rout’ to ‘transform.Rout.save’ ... OK
  Running ‘warp.R’
  Comparing ‘warp.Rout’ to ‘warp.Rout.save’ ...4c4
< Linking to GEOS 3.6.1, GDAL 2.2.4, PROJ 4.9.3
---
> Linking to GEOS 3.6.2, GDAL 2.2.3, PROJ 4.9.3
  Running ‘write.R’
  Comparing ‘write.Rout’ to ‘write.Rout.save’ ... OK
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > ## load dependencies
  > library(testthat)
  > 
  > ## test package
  > test_check("stars")
  Loading required package: stars
  Loading required package: abind
  Loading required package: sf
  Linking to GEOS 3.6.1, GDAL 2.2.4, PROJ 4.9.3