Running ‘testthat.R’ [9s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(trialr)
  Loading required package: Rcpp
  > 
  > test_check("trialr")
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 1.8e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.18 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.010668 seconds (Warm-up)
  Chain 1:                0.009558 seconds (Sampling)
  Chain 1:                0.020226 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.010887 seconds (Warm-up)
  Chain 2:                0.007645 seconds (Sampling)
  Chain 2:                0.018532 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000103 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.03 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.03233 seconds (Warm-up)
  Chain 1:                0.026224 seconds (Sampling)
  Chain 1:                0.058554 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 9e-06 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.028604 seconds (Warm-up)
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  Chain 2:                0.060077 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 1.6e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.037517 seconds (Warm-up)
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  Chain 3:                0.074472 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 1.1e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.11 seconds.
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.036539 seconds (Warm-up)
  Chain 4:                0.034566 seconds (Sampling)
  Chain 4:                0.071105 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 6.5e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.65 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.100235 seconds (Warm-up)
  Chain 1:                0.040021 seconds (Sampling)
  Chain 1:                0.140256 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.5e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.25 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2:  Elapsed Time: 0.109082 seconds (Warm-up)
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  Chain 2:                0.162959 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 4.5e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.45 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.235441 seconds (Warm-up)
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  Chain 1:                0.399473 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.6e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.26 seconds.
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  Chain 2:  Elapsed Time: 0.274897 seconds (Warm-up)
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  Chain 2:                0.477575 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 3.5e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.35 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3:  Elapsed Time: 0.258109 seconds (Warm-up)
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  Chain 3:                0.440514 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 2.4e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.263876 seconds (Warm-up)
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  Chain 4:                0.466774 seconds (Total)
  Chain 4: 
  ── 1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_st
  all(abs(mod$utility - c(-0.91, -0.47, 0.42, 0.64, 0.64)) < epsilon) isn't true.
  
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 4.1e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.41 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.253923 seconds (Warm-up)
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  Chain 1:                0.439675 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.3 seconds.
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.241603 seconds (Warm-up)
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  Chain 2:                0.412779 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 2.9e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.223053 seconds (Warm-up)
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  Chain 3:                0.390749 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 3.5e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.35 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.250443 seconds (Warm-up)
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  Chain 4:                0.410074 seconds (Total)
  Chain 4: 
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 180 SKIPPED: 0 FAILED: 1
  1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_stan_efftox.R#44) 
  
  Error: testthat unit tests failed
  Execution halted