Running ‘testthat.R’ [60s/61s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > 
  > suppressPackageStartupMessages(library(metacoder))
  > 
  > test_check("metacoder")
  ── 1. Failure: Mothur classify.seqs *.taxonomy parsing w/ scores (@test--parsers
  readLines(out_path) not equal to strsplit(raw_data, split = "\n")[[1]].
  5/5 mismatches
  x[1]: "AY457915\tBacteria;Firmicutes;Clostridiales;Johnsonella_et_rel.;Johnsonel
  x[1]: la_et_rel.;Johnsonella_et_rel.;Eubacterium_eligens_et_rel.;Lachnospira_pec
  x[1]: tinoschiza;"
  y[1]: "AY457915\tBacteria(100);Firmicutes(99);Clostridiales(99);Johnsonella_et_r
  y[1]: el.(99);Johnsonella_et_rel.(99);Johnsonella_et_rel.(91);Eubacterium_eligen
  y[1]: s_et_rel.(89);Lachnospira_pectinoschiza(80);"
  
  x[2]: "AY457914\tBacteria;Firmicutes;Clostridiales;Johnsonella_et_rel.;Johnsonel
  x[2]: la_et_rel.;Johnsonella_et_rel.;Eubacterium_eligens_et_rel.;Eubacterium_eli
  x[2]: gens;Eubacterium_eligens;"
  y[2]: "AY457914\tBacteria(100);Firmicutes(100);Clostridiales(100);Johnsonella_et
  y[2]: _rel.(100);Johnsonella_et_rel.(100);Johnsonella_et_rel.(95);Eubacterium_el
  y[2]: igens_et_rel.(92);Eubacterium_eligens(84);Eubacterium_eligens(81);"
  
  x[3]: "AY457913\tBacteria;Firmicutes;Clostridiales;Johnsonella_et_rel.;Johnsonel
  x[3]: la_et_rel.;Roseoburia_et_rel.;Roseoburia_et_rel.;Eubacterium_ramulus_et_re
  x[3]: l.;uncultured;"
  y[3]: "AY457913\tBacteria(100);Firmicutes(100);Clostridiales(100);Johnsonella_et
  y[3]: _rel.(100);Johnsonella_et_rel.(100);Roseoburia_et_rel.(97);Roseoburia_et_r
  y[3]: el.(97);Eubacterium_ramulus_et_rel.(90);uncultured(90);"
  
  x[4]: "AY457912\tBacteria;Firmicutes;Clostridiales;Johnsonella_et_rel.;Johnsonel
  x[4]: la_et_rel.;"
  y[4]: "AY457912\tBacteria(100);Firmicutes(99);Clostridiales(99);Johnsonella_et_r
  y[4]: el.(99);Johnsonella_et_rel.(99);"
  
  x[5]: "AY457911\tBacteria;Firmicutes;Clostridiales;Ruminococcus_et_rel.;Anaerofi
  x[5]: lum-Faecalibacterium;Faecalibacterium;Faecalibacterium_prausnitzii;"
  y[5]: "AY457911\tBacteria(100);Firmicutes(99);Clostridiales(98);Ruminococcus_et_
  y[5]: rel.(96);Anaerofilum-Faecalibacterium(92);Faecalibacterium(92);Faecalibact
  y[5]: erium_prausnitzii(90);"
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 95 SKIPPED: 1 FAILED: 1
  1. Failure: Mothur classify.seqs *.taxonomy parsing w/ scores (@test--parsers_and_writers.R#50) 
  
  Error: testthat unit tests failed
  Execution halted