Running ‘testthat.R’ [9s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(trialr)
  Loading required package: Rcpp
  > 
  > test_check("trialr")
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 2.5e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.25 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.008916 seconds (Warm-up)
  Chain 1:                0.007827 seconds (Sampling)
  Chain 1:                0.016743 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.13 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.009113 seconds (Warm-up)
  Chain 2:                0.00768 seconds (Sampling)
  Chain 2:                0.016793 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000142 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.42 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.03378 seconds (Warm-up)
  Chain 1:                0.03048 seconds (Sampling)
  Chain 1:                0.06426 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.035858 seconds (Warm-up)
  Chain 2:                0.037735 seconds (Sampling)
  Chain 2:                0.073593 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 1.4e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.14 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.035675 seconds (Warm-up)
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  Chain 3:                0.071499 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 1.4e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.14 seconds.
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.033593 seconds (Warm-up)
  Chain 4:                0.032972 seconds (Sampling)
  Chain 4:                0.066565 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 5.5e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.55 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.096564 seconds (Warm-up)
  Chain 1:                0.040084 seconds (Sampling)
  Chain 1:                0.136648 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.5e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.25 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.109368 seconds (Warm-up)
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  Chain 2:                0.156994 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 3.6e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.36 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.2298 seconds (Warm-up)
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  Chain 1:                0.389901 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.9e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.250333 seconds (Warm-up)
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  Chain 2:                0.441998 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 3.4e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.34 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.241565 seconds (Warm-up)
  Chain 3:                0.177167 seconds (Sampling)
  Chain 3:                0.418732 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 2e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.2 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.246776 seconds (Warm-up)
  Chain 4:                0.192016 seconds (Sampling)
  Chain 4:                0.438792 seconds (Total)
  Chain 4: 
  ── 1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_st
  all(abs(mod$utility - c(-0.91, -0.47, 0.42, 0.64, 0.64)) < epsilon) isn't true.
  
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 5.5e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.55 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.245127 seconds (Warm-up)
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  Chain 1:                0.437828 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.9e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.238138 seconds (Warm-up)
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  Chain 2:                0.409623 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 3.2e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.32 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.235603 seconds (Warm-up)
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  Chain 3:                0.409735 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 2.7e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.27 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.234404 seconds (Warm-up)
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  Chain 4:                0.412198 seconds (Total)
  Chain 4: 
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 180 SKIPPED: 0 FAILED: 1
  1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_stan_efftox.R#44) 
  
  Error: testthat unit tests failed
  Execution halted