Running ‘testthat.R’ [9s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(trialr)
  Loading required package: Rcpp
  > 
  > test_check("trialr")
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 2.7e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.27 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.010846 seconds (Warm-up)
  Chain 1:                0.009643 seconds (Sampling)
  Chain 1:                0.020489 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.4e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.14 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.011185 seconds (Warm-up)
  Chain 2:                0.009634 seconds (Sampling)
  Chain 2:                0.020819 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000104 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.04 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.031326 seconds (Warm-up)
  Chain 1:                0.028164 seconds (Sampling)
  Chain 1:                0.05949 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.035588 seconds (Warm-up)
  Chain 2:                0.038379 seconds (Sampling)
  Chain 2:                0.073967 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 1.1e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.11 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.032658 seconds (Warm-up)
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  Chain 3:                0.0637 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 1.8e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.18 seconds.
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.029356 seconds (Warm-up)
  Chain 4:                0.031204 seconds (Sampling)
  Chain 4:                0.06056 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 4.8e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.48 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.0968 seconds (Warm-up)
  Chain 1:                0.038751 seconds (Sampling)
  Chain 1:                0.135551 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.23 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.106528 seconds (Warm-up)
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  Chain 2:                0.153324 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 4.3e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.43 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1:  Elapsed Time: 0.242687 seconds (Warm-up)
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  Chain 1:                0.401319 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.4e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
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  Chain 2:  Elapsed Time: 0.243658 seconds (Warm-up)
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  Chain 2:                0.431508 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 2.5e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.25 seconds.
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  Chain 3:  Elapsed Time: 0.249096 seconds (Warm-up)
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  Chain 3:                0.416922 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 2.2e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.22 seconds.
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  Chain 4:  Elapsed Time: 0.241802 seconds (Warm-up)
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  Chain 4:                0.424363 seconds (Total)
  Chain 4: 
  ── 1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_st
  all(abs(mod$utility - c(-0.91, -0.47, 0.42, 0.64, 0.64)) < epsilon) isn't true.
  
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 3.5e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.35 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.239239 seconds (Warm-up)
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  Chain 1:                0.425285 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.7e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.27 seconds.
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.24074 seconds (Warm-up)
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  Chain 2:                0.42098 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 3.1e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.31 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.230805 seconds (Warm-up)
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  Chain 3:                0.402794 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 3.1e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.31 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.234316 seconds (Warm-up)
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  Chain 4:                0.410528 seconds (Total)
  Chain 4: 
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 180 SKIPPED: 0 FAILED: 1
  1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_stan_efftox.R#44) 
  
  Error: testthat unit tests failed
  Execution halted