Running ‘testthat.R’ [9s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(trialr)
  Loading required package: Rcpp
  > 
  > test_check("trialr")
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 2.9e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.010394 seconds (Warm-up)
  Chain 1:                0.0095 seconds (Sampling)
  Chain 1:                0.019894 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.1e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.11 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.011072 seconds (Warm-up)
  Chain 2:                0.008336 seconds (Sampling)
  Chain 2:                0.019408 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 9.3e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.93 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.036004 seconds (Warm-up)
  Chain 1:                0.030458 seconds (Sampling)
  Chain 1:                0.066462 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.03408 seconds (Warm-up)
  Chain 2:                0.03749 seconds (Sampling)
  Chain 2:                0.07157 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 1.3e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.13 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.033657 seconds (Warm-up)
  Chain 3:                0.034675 seconds (Sampling)
  Chain 3:                0.068332 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 1e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.033967 seconds (Warm-up)
  Chain 4:                0.031058 seconds (Sampling)
  Chain 4:                0.065025 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 5.7e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.57 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.088972 seconds (Warm-up)
  Chain 1:                0.034831 seconds (Sampling)
  Chain 1:                0.123803 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 4.3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.43 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.112183 seconds (Warm-up)
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  Chain 2:                0.160579 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 2.8e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.28 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.239348 seconds (Warm-up)
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  Chain 1:                0.407341 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.2e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.22 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.259733 seconds (Warm-up)
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  Chain 2:                0.449231 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 2.4e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.246593 seconds (Warm-up)
  Chain 3:                0.178887 seconds (Sampling)
  Chain 3:                0.42548 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 2.3e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.23 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.258447 seconds (Warm-up)
  Chain 4:                0.194648 seconds (Sampling)
  Chain 4:                0.453095 seconds (Total)
  Chain 4: 
  ── 1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_st
  all(abs(mod$utility - c(-0.91, -0.47, 0.42, 0.64, 0.64)) < epsilon) isn't true.
  
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 5.6e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.56 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.234235 seconds (Warm-up)
  Chain 1:                0.193559 seconds (Sampling)
  Chain 1:                0.427794 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.9e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.239472 seconds (Warm-up)
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  Chain 2:                0.412934 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 2.8e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.28 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.225974 seconds (Warm-up)
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  Chain 3:                0.398814 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 3.2e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.32 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.239578 seconds (Warm-up)
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  Chain 4:                0.422331 seconds (Total)
  Chain 4: 
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 180 SKIPPED: 0 FAILED: 1
  1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_stan_efftox.R#44) 
  
  Error: testthat unit tests failed
  Execution halted