Running ‘testthat.R’ [9s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(trialr)
  Loading required package: Rcpp
  > 
  > test_check("trialr")
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 2.6e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.26 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.010612 seconds (Warm-up)
  Chain 1:                0.009534 seconds (Sampling)
  Chain 1:                0.020146 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.13 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.011465 seconds (Warm-up)
  Chain 2:                0.009842 seconds (Sampling)
  Chain 2:                0.021307 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 7.4e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.74 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.032939 seconds (Warm-up)
  Chain 1:                0.030219 seconds (Sampling)
  Chain 1:                0.063158 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.2e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.12 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.034681 seconds (Warm-up)
  Chain 2:                0.036297 seconds (Sampling)
  Chain 2:                0.070978 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 1e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.034135 seconds (Warm-up)
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  Chain 3:                0.068117 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 1e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.034862 seconds (Warm-up)
  Chain 4:                0.031756 seconds (Sampling)
  Chain 4:                0.066618 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 3.6e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.36 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.096872 seconds (Warm-up)
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  Chain 1:                0.136615 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.2e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.22 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.110324 seconds (Warm-up)
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  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 2.7e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.27 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1:  Elapsed Time: 0.239747 seconds (Warm-up)
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  Chain 1:                0.386756 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.2e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.22 seconds.
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.269024 seconds (Warm-up)
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  Chain 2:                0.469766 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 2.4e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3:  Elapsed Time: 0.264137 seconds (Warm-up)
  Chain 3:                0.187573 seconds (Sampling)
  Chain 3:                0.45171 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 2.2e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.22 seconds.
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  Chain 4:  Elapsed Time: 0.271238 seconds (Warm-up)
  Chain 4:                0.208864 seconds (Sampling)
  Chain 4:                0.480102 seconds (Total)
  Chain 4: 
  ── 1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_st
  all(abs(mod$utility - c(-0.91, -0.47, 0.42, 0.64, 0.64)) < epsilon) isn't true.
  
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 5.1e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.51 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.25435 seconds (Warm-up)
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  Chain 1:                0.444942 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.3 seconds.
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.239171 seconds (Warm-up)
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  Chain 2:                0.411445 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 3.1e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.31 seconds.
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.230435 seconds (Warm-up)
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  Chain 3:                0.399696 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 3.3e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.33 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.243397 seconds (Warm-up)
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  Chain 4:                0.413062 seconds (Total)
  Chain 4: 
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 180 SKIPPED: 0 FAILED: 1
  1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_stan_efftox.R#44) 
  
  Error: testthat unit tests failed
  Execution halted