Running ‘testthat.R’ [9s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(trialr)
  Loading required package: Rcpp
  > 
  > test_check("trialr")
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 1.8e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.18 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.010651 seconds (Warm-up)
  Chain 1:                0.008208 seconds (Sampling)
  Chain 1:                0.018859 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.009991 seconds (Warm-up)
  Chain 2:                0.00913 seconds (Sampling)
  Chain 2:                0.019121 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 8.8e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.88 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.029853 seconds (Warm-up)
  Chain 1:                0.024975 seconds (Sampling)
  Chain 1:                0.054828 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.033337 seconds (Warm-up)
  Chain 2:                0.03503 seconds (Sampling)
  Chain 2:                0.068367 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 1.2e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.12 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.031699 seconds (Warm-up)
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  Chain 3:                0.067801 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 8e-06 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.08 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.033325 seconds (Warm-up)
  Chain 4:                0.032568 seconds (Sampling)
  Chain 4:                0.065893 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 4.8e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.48 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.097334 seconds (Warm-up)
  Chain 1:                0.037998 seconds (Sampling)
  Chain 1:                0.135332 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.23 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.106607 seconds (Warm-up)
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  Chain 2:                0.152203 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 3.7e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.37 seconds.
  Chain 1: Adjust your expectations accordingly!
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.251122 seconds (Warm-up)
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  Chain 1:                0.419571 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.8e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.28 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.256242 seconds (Warm-up)
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  Chain 2:                0.446738 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 2.7e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.27 seconds.
  Chain 3: Adjust your expectations accordingly!
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.25325 seconds (Warm-up)
  Chain 3:                0.178864 seconds (Sampling)
  Chain 3:                0.432114 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 5.9e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.59 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.258211 seconds (Warm-up)
  Chain 4:                0.196815 seconds (Sampling)
  Chain 4:                0.455026 seconds (Total)
  Chain 4: 
  ── 1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_st
  all(abs(mod$utility - c(-0.91, -0.47, 0.42, 0.64, 0.64)) < epsilon) isn't true.
  
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 5.9e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.59 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.243004 seconds (Warm-up)
  Chain 1:                0.193082 seconds (Sampling)
  Chain 1:                0.436086 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 4.1e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.41 seconds.
  Chain 2: Adjust your expectations accordingly!
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.245357 seconds (Warm-up)
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  Chain 2:                0.422259 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 5e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.5 seconds.
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.234528 seconds (Warm-up)
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  Chain 3:                0.411827 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 3.4e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.34 seconds.
  Chain 4: Adjust your expectations accordingly!
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.250897 seconds (Warm-up)
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  Chain 4:                0.431386 seconds (Total)
  Chain 4: 
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 180 SKIPPED: 0 FAILED: 1
  1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_stan_efftox.R#44) 
  
  Error: testthat unit tests failed
  Execution halted