AB.plot: no visible global function definition for ‘complete.cases’
AB.plot: no visible global function definition for ‘ave’
AB.plot: no visible global function definition for ‘segments’
AltReg: no visible global function definition for ‘complete.cases’
AltReg: no visible global function definition for ‘fitted’
AltReg: no visible global function definition for ‘lm’
AltReg: no visible global function definition for ‘lme’
AltReg: no visible global function definition for ‘flush.console’
BA.est: no visible global function definition for ‘lmeControl’
BA.est: no visible global function definition for ‘qt’
BA.plot: no visible global function definition for ‘grey’
BA.plot: no visible global function definition for ‘str’
BlandAltman: no visible global function definition for ‘qt’
BlandAltman: no visible global function definition for ‘sd’
BlandAltman: no visible global function definition for ‘pt’
BlandAltman : cnr: no visible global function definition for ‘par’
BlandAltman: no visible global function definition for ‘lm’
BlandAltman: no visible global function definition for ‘coef’
BlandAltman: no visible global function definition for ‘plot.default’
BlandAltman: no visible global function definition for ‘abline’
BlandAltman: no visible global function definition for ‘text’
BlandAltman: no visible global function definition for ‘points’
BlandAltman: no visible global function definition for ‘axis’
BlandAltman: no visible global function definition for ‘box’
BlandAltman: no visible global function definition for ‘par’
Deming: no visible global function definition for ‘complete.cases’
Deming: no visible global function definition for ‘var’
Deming: no visible global function definition for ‘cov’
Deming: no visible binding for global variable ‘quantile’
MCmcmc: no visible global function definition for ‘flush.console’
MCmcmc: no visible global function definition for ‘jags.model’
MCmcmc: no visible global function definition for ‘bugs’
MCmcmc: no visible global function definition for ‘read.bugs’
Meth.sim: no visible global function definition for ‘runif’
Meth.sim: no visible global function definition for ‘rnorm’
Meth.sim: no visible global function definition for ‘rbinom’
PBreg: no visible global function definition for ‘complete.cases’
PBreg: no visible global function definition for ‘combn’
PBreg: no visible global function definition for ‘qnorm’
PBreg: no visible global function definition for ‘median’
TDI: no visible global function definition for ‘sd’
TDI: no visible global function definition for ‘qnorm’
TDI : FF: no visible global function definition for ‘pnorm’
TDI: no visible global function definition for ‘uniroot’
TDI: no visible global function definition for ‘quantile’
VC.est: no visible global function definition for ‘lmeControl’
VC.est.fixed: no visible global function definition for ‘lmeControl’
VC.est.fixed: no visible global function definition for ‘lme’
VC.est.fixed: no visible global function definition for ‘pdIdent’
VC.est.fixed: no visible global function definition for ‘varIdent’
VC.est.fixed: no visible global function definition for ‘pdDiag’
VC.est.fixed: no visible global function definition for ‘pdSymm’
VC.est.fixed: no visible global function definition for ‘residuals’
VC.est.random: no visible global function definition for ‘lmeControl’
VC.est.random: no visible global function definition for ‘lme’
VC.est.random: no visible global function definition for ‘pdBlocked’
VC.est.random: no visible global function definition for ‘pdIdent’
VC.est.random: no visible global function definition for ‘varIdent’
VC.est.random: no visible global function definition for ‘ranef’
VC.est.random: no visible global function definition for ‘pdDiag’
VC.est.random: no visible global function definition for ‘tail’
VC.est.random: no visible global function definition for ‘residuals’
bothlines: no visible global function definition for ‘abline’
bothlines: no visible global function definition for ‘lm’
bothlines: no visible global function definition for ‘coef’
connect2mean: no visible global function definition for ‘ave’
connect2mean: no visible global function definition for ‘segments’
corr.measures: no visible global function definition for
  ‘complete.cases’
corr.measures: no visible global function definition for ‘var’
corr.measures: no visible global function definition for ‘cov’
corr.measures: no visible global function definition for ‘cor’
do.DA.reg: no visible global function definition for ‘complete.cases’
do.DA.reg: no visible global function definition for ‘lm’
find.mean: no visible global function definition for ‘varnames’
find.vars: no visible global function definition for ‘varnames’
lines.MethComp: no visible global function definition for ‘par’
lines.MethComp: no visible global function definition for ‘qt’
lines.MethComp: no visible global function definition for ‘matlines’
lines.MethComp: no visible global function definition for ‘axis’
lines.MethComp: no visible global function definition for ‘box’
mean.Meth: no visible global function definition for ‘aggregate’
middle: no visible global function definition for ‘quantile’
pairs.MCmcmc: no visible global function definition for ‘rainbow’
pairs.MCmcmc: no visible global function definition for ‘pairs’
pairs.MCmcmc: no visible global function definition for ‘varnames’
perm.repl: no visible global function definition for ‘runif’
plot.MCmcmc: no visible global function definition for ‘gray’
plot.MCmcmc : conv.pair: no visible global function definition for
  ‘abline’
plot.MCmcmc : conv.pair: no visible global function definition for
  ‘strwidth’
plot.MCmcmc : conv.pair: no visible global function definition for
  ‘strheight’
plot.MCmcmc : conv.pair: no visible global function definition for
  ‘rect’
plot.MCmcmc : conv.pair: no visible global function definition for
  ‘par’
plot.MCmcmc : conv.pair: no visible global function definition for
  ‘text’
plot.MCmcmc : conv.pair: no visible global function definition for
  ‘box’
plot.MCmcmc: no visible global function definition for ‘par’
plot.MCmcmc: no visible global function definition for ‘plot’
plot.MCmcmc: no visible global function definition for ‘axis’
plot.MCmcmc: no visible global function definition for ‘mtext’
plot.Meth : pnl: no visible global function definition for ‘abline’
plot.Meth : pnl: no visible global function definition for ‘points’
plot.Meth : pnu: no visible global function definition for ‘sd’
plot.Meth : pnu: no visible global function definition for ‘abline’
plot.Meth : pnu: no visible global function definition for ‘points’
plot.Meth: no visible global function definition for ‘par’
plot.Meth: no visible global function definition for ‘plot’
plot.Meth: no visible global function definition for ‘text’
plot.Meth: no visible global function definition for ‘box’
plot.Meth: no visible global function definition for ‘axis’
plot.MethComp: no visible global function definition for ‘grey’
plot.MethComp: no visible global function definition for ‘plot’
plot.MethComp: no visible global function definition for ‘abline’
plot.MethComp: no visible global function definition for ‘box’
plot.MethComp: no visible global function definition for ‘strwidth’
plot.MethComp: no visible global function definition for ‘strheight’
plot.MethComp: no visible global function definition for ‘par’
plot.MethComp: no visible global function definition for ‘rect’
plot.MethComp: no visible global function definition for ‘text’
plot.PBreg: no visible global function definition for ‘predict’
plot.PBreg: no visible global function definition for ‘plot’
plot.PBreg: no visible global function definition for ‘polygon’
plot.PBreg: no visible global function definition for ‘abline’
plot.PBreg: no visible global function definition for ‘points’
plot.PBreg: no visible global function definition for ‘text’
plot.PBreg: no visible global function definition for ‘IQR’
plot.PBreg: no visible global function definition for ‘hist’
plot.PBreg: no visible global function definition for ‘density’
plot.PBreg: no visible global function definition for ‘lines’
plot.VarComp: no visible global function definition for ‘gray’
plot.VarComp: no visible global function definition for ‘density’
plot.VarComp: no visible global function definition for ‘quantile’
plot.VarComp: no visible global function definition for ‘plot’
plot.VarComp: no visible global function definition for ‘abline’
plot.VarComp: no visible global function definition for ‘lines’
plot.VarComp: no visible global function definition for ‘axis’
plot.VarComp: no visible global function definition for ‘par’
plot.VarComp: no visible global function definition for ‘text’
plot.VarComp: no visible global function definition for ‘mtext’
points.MethComp: no visible global function definition for ‘points’
post.MCmcmc: no visible global function definition for ‘rainbow’
post.mean: no visible global function definition for ‘gray’
post.sd: no visible global function definition for ‘gray’
predict.PBreg: no visible global function definition for ‘qnorm’
predict.PBreg: no visible global function definition for ‘median’
predict.PBreg: no visible global function definition for ‘quantile’
print.MCmcmc: no visible global function definition for ‘ftable’
print.MethComp: no visible global function definition for ‘ftable’
sort.Meth: no visible global function definition for ‘ave’
subset.MCmcmc : char.2.num: no visible global function definition for
  ‘varnames’
summary.MCmcmc: no visible binding for global variable ‘quantile’
summary.Meth: no visible global function definition for ‘addmargins’
to.long: no visible global function definition for ‘reshape’
to.wide: no visible global function definition for ‘reshape’
trace.mean: no visible global function definition for ‘gray’
trace.sd: no visible global function definition for ‘gray’
Undefined global functions or variables:
  IQR abline addmargins aggregate ave axis box bugs coef combn
  complete.cases cor cov density fitted flush.console ftable gray grey
  hist jags.model lines lm lme lmeControl matlines median mtext pairs
  par pdBlocked pdDiag pdIdent pdSymm plot plot.default pnorm points
  polygon predict pt qnorm qt quantile rainbow ranef rbinom read.bugs
  rect reshape residuals rnorm runif sd segments str strheight strwidth
  tail text uniroot var varIdent varnames
Consider adding
  importFrom("grDevices", "gray", "grey", "rainbow")
  importFrom("graphics", "abline", "axis", "box", "hist", "lines",
             "matlines", "mtext", "pairs", "par", "plot", "plot.default",
             "points", "polygon", "rect", "segments", "strheight",
             "strwidth", "text")
  importFrom("stats", "IQR", "addmargins", "aggregate", "ave", "coef",
             "complete.cases", "cor", "cov", "density", "fitted",
             "ftable", "lm", "median", "pnorm", "predict", "pt", "qnorm",
             "qt", "quantile", "rbinom", "reshape", "residuals", "rnorm",
             "runif", "sd", "uniroot", "var")
  importFrom("utils", "combn", "flush.console", "str", "tail")
to your NAMESPACE file.