Running ‘test-all.R’
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library("testthat")
  > test_check("phylocomr")
  Loading required package: phylocomr
  ── 1. Error: ph_aot works with data.frame input (@test-aot.R#13)  ──────────────
  Program '/home/ripley/R/Lib32/phylocomr/bin//phylocom' terminated by SIGNAL (Segmentation Fault)
  1: ph_aot(traits, phylo = phylo_str) at testthat/test-aot.R:13
  2: suppressWarnings(phylocom(c("aotf", "-t", basename(traits), "-f", basename(phylo), 
         "-r", randomizations, "-x", trait_contrasts, if (ebl_unstconst) "-e "), intern = TRUE))
  3: withCallingHandlers(expr, warning = function(w) invokeRestart("muffleWarning"))
  4: phylocom(c("aotf", "-t", basename(traits), "-f", basename(phylo), "-r", randomizations, 
         "-x", trait_contrasts, if (ebl_unstconst) "-e "), intern = TRUE)
  5: run("phylocom", args, intern)
  6: sys::exec_internal(path, args, error = FALSE)
  7: exec_wait(cmd, args, std_out = outcon, std_err = errcon, std_in = std_in, timeout = timeout)
  8: execute(cmd = cmd, args = args, std_out = outfun, std_err = errfun, std_in = std_in, 
         wait = TRUE, timeout = timeout)
  
  ── 2. Error: ph_aot works with file input (@test-aot.R#39)  ────────────────────
  Program '/home/ripley/R/Lib32/phylocomr/bin//phylocom' terminated by SIGNAL (Segmentation Fault)
  1: ph_aot(traits_file2, phylo_file2) at testthat/test-aot.R:39
  2: suppressWarnings(phylocom(c("aotf", "-t", basename(traits), "-f", basename(phylo), 
         "-r", randomizations, "-x", trait_contrasts, if (ebl_unstconst) "-e "), intern = TRUE))
  3: withCallingHandlers(expr, warning = function(w) invokeRestart("muffleWarning"))
  4: phylocom(c("aotf", "-t", basename(traits), "-f", basename(phylo), "-r", randomizations, 
         "-x", trait_contrasts, if (ebl_unstconst) "-e "), intern = TRUE)
  5: run("phylocom", args, intern)
  6: sys::exec_internal(path, args, error = FALSE)
  7: exec_wait(cmd, args, std_out = outcon, std_err = errcon, std_in = std_in, timeout = timeout)
  8: execute(cmd = cmd, args = args, std_out = outfun, std_err = errfun, std_in = std_in, 
         wait = TRUE, timeout = timeout)
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 149 SKIPPED: 6 FAILED: 2
  1. Error: ph_aot works with data.frame input (@test-aot.R#13) 
  2. Error: ph_aot works with file input (@test-aot.R#39) 
  
  Error: testthat unit tests failed
  Execution halted