Running examples in 'survivALL-Ex.R' failed
The error most likely occurred in:

> ### Name: plotALL
> ### Title: Calculate and combine hazard ratio, pvalue, threshold and
> ###   area-between-curve data and plot
> ### Aliases: plotALL
> 
> ### ** Examples
> 
> data(nki_subset)
> library(Biobase)
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

> 
> gene_vec <- exprs(nki_subset)["NM_004448", ] #ERBB2 gene id
> 
> plotALL(measure = gene_vec, 
+     srv = pData(nki_subset), 
+     time = "t.dmfs", 
+     event = "e.dmfs", 
+     title = "ERBB2 Example") 
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
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Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in strata(sstrat) : could not find function "strata"
Error in namespaceExport(ns, exports) : 
  undefined exports: %s!=%, %s!==%, %s+%, %s<%, %s<=%, %s==%, %s===%, %s>%, %s>=%, %stri!=%, %stri!==%, %stri+%, %stri<%, %stri<=%, %stri==%, %stri===%, %stri>%, %stri>=%, stri_datetime_add<-, stri_sub<-, stri_subset<-, stri_subset_charclass<-, stri_subset_coll<-, stri_subset_fixed<-, stri_subset_regex<-, stri_c, stri_c_list, stri_cmp, stri_cmp_eq, stri_cmp_equiv, stri_cmp_ge, stri_cmp_gt, stri_cmp_le, stri_cmp_lt, stri_cmp_neq, stri_cmp_nequiv, stri_compare, stri_conv, stri_count, stri_count_boundaries, stri_count_charclass, stri_count_coll, stri_count_fixed, stri_count_regex, stri_count_words, stri_datetime_add, stri_datetime_create, stri_datetime_fields, stri_datetime_format, stri_datetime_fstr, stri_datetime_now, stri_datetime_parse, stri_datetime_symbols, stri_detect, stri_detect_charclass, stri_detect_coll, stri_detect_fixed, stri_detect_regex, stri_dup, stri_duplicated, stri_duplicated_any, stri_enc_detect, stri_enc_detect2, stri_enc_fromutf32, stri_enc_get, stri_enc_inf
Calls: plotALL ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
In addition: Warning messages:
1: In fitter(X, Y, strats, offset, init, control, weights = weights,  :
  Loglik converged before variable  1 ; beta may be infinite. 
2: In min(x) : no non-missing arguments to min; returning Inf
3: In max(x) : no non-missing arguments to max; returning -Inf
Execution halted