Error in re-building vignettes:
  ...
Loading required package: Rcpp

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Joining, by = "gene"
Joining, by = "cell"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Have 35 cells after filtering
Joining, by = "cell"
Have 20 genes after filtering
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Compiling model
DIAGNOSTIC(S) FROM PARSER:
Info: left-hand side variable (name=result) occurs on right-hand side of assignment, causing inefficient deep copy to avoid aliasing.

the number of chains is less than 1; sampling not done
Saving compiled model to /tmp/RtmpIRjprs/DeLorean-exact-sizes.rds
TSP:scaled:none:1; time=2.071s; LL=-3357.62749667045
R2E:scaled:none:1; time=2.148s; LL=-3478.43060872918
HC:scaled:none:1; time=0.00499999999999545s; LL=-3597.62850406239
GW:scaled:none:1; time=0.00500000000002387s; LL=-3422.52696420388
OLO:scaled:none:1; time=0.0040000000000191s; LL=-3411.30603849331
TSP:unscaled:none:1; time=0.00999999999999091s; LL=-3410.48356065215
R2E:unscaled:none:1; time=0.00899999999998613s; LL=-3512.3820340977
HC:unscaled:none:1; time=0.0200000000000102s; LL=-3571.72709061913
GW:unscaled:none:1; time=0.00499999999999545s; LL=-3369.29953832409
OLO:unscaled:none:1; time=0.00500000000002387s; LL=-3362.0549237845
TSP:scaled:pca:1; time=0.00900000000001455s; LL=-3464.54288580956
R2E:scaled:pca:1; time=0.00899999999998613s; LL=-3463.70824088182
HC:scaled:pca:1; time=0.0040000000000191s; LL=-3570.39490299131
GW:scaled:pca:1; time=0.00499999999999545s; LL=-3464.54288580956
OLO:scaled:pca:1; time=0.0120000000000005s; LL=-3464.54288580956
TSP:unscaled:pca:1; time=0.00800000000000978s; LL=-3429.27409038796
R2E:unscaled:pca:1; time=0.00800000000000978s; LL=-3460.72108852355
HC:unscaled:pca:1; time=0.0200000000000102s; LL=-3581.71333734486
GW:unscaled:pca:1; time=0.00499999999999545s; LL=-3429.27409038796
OLO:unscaled:pca:1; time=0.0040000000000191s; LL=-3429.27409038796
TSP:scaled:ica:1; time=0.0159999999999911s; LL=-3463.70824088182
R2E:scaled:ica:1; time=0.0159999999999911s; LL=-3463.70824088182
HC:scaled:ica:1; time=0.0029999999999859s; LL=-3570.39490299131
GW:scaled:ica:1; time=0.0040000000000191s; LL=-3464.54288580956
OLO:scaled:ica:1; time=0.00399999999999068s; LL=-3464.54288580956
TSP:unscaled:ica:1; time=0.0109999999999957s; LL=-3429.27409038796
R2E:unscaled:ica:1; time=0.00800000000000978s; LL=-3460.72108852355
HC:unscaled:ica:1; time=0.0040000000000191s; LL=-3581.71333734486
GW:unscaled:ica:1; time=0.00399999999999068s; LL=-3429.27409038796
OLO:unscaled:ica:1; time=0.00399999999999068s; LL=-3429.27409038796
TSP:scaled:mds:1; time=0.00800000000000978s; LL=-3464.54288580956
R2E:scaled:mds:1; time=0.00900000000001455s; LL=-3463.70824088182
HC:scaled:mds:1; time=0.0040000000000191s; LL=-3570.39490299131
GW:scaled:mds:1; time=0.0180000000000007s; LL=-3464.54288580956
OLO:scaled:mds:1; time=0.00399999999999068s; LL=-3464.54288580956
TSP:unscaled:mds:1; time=0.007000000000005s; LL=-3446.51768168496
R2E:unscaled:mds:1; time=0.00799999999998136s; LL=-3460.72108852355
HC:unscaled:mds:1; time=0.00399999999999068s; LL=-3581.71333734486
GW:unscaled:mds:1; time=0.0040000000000191s; LL=-3429.27409038796
OLO:unscaled:mds:1; time=0.00399999999999068s; LL=-3429.27409038796
R2E:scaled:pca:2; time=0.00999999999999091s; LL=-3467.69690516739
TSP:scaled:pca:2; time=0.00800000000000978s; LL=-3374.3468095223
HC:scaled:pca:2; time=0.00300000000001432s; LL=-3496.79857825806
GW:scaled:pca:2; time=0.00499999999999545s; LL=-3500.15837384525
TSP:unscaled:pca:2; time=0.00800000000000978s; LL=-3375.46168672836
OLO:scaled:pca:2; time=0.0040000000000191s; LL=-3367.72001685008
HC:unscaled:pca:2; time=0.00399999999999068s; LL=-3523.16354181676
R2E:unscaled:pca:2; time=0.00799999999998136s; LL=-3472.37114643713
GW:unscaled:pca:2; time=0.0040000000000191s; LL=-3389.99764061987
OLO:unscaled:pca:2; time=0.0040000000000191s; LL=-3375.39350203929
R2E:scaled:kfa:2; time=0.0330000000000155s; LL=-3503.04398088353
TSP:scaled:kfa:2; time=0.0250000000000057s; LL=-3470.24984977673
GW:scaled:kfa:2; time=0.0040000000000191s; LL=-3491.79246124866
HC:scaled:kfa:2; time=0.0040000000000191s; LL=-3510.073661973
TSP:unscaled:kfa:2; time=0.0200000000000102s; LL=-3605.45868013271
OLO:scaled:kfa:2; time=0.0040000000000191s; LL=-3439.5898178327
HC:unscaled:kfa:2; time=0.0040000000000191s; LL=-3621.90136917531
R2E:unscaled:kfa:2; time=0.021000000000015s; LL=-3605.46170832646
OLO:unscaled:kfa:2; time=0.0040000000000191s; LL=-3592.5214393028
GW:unscaled:kfa:2; time=0.00399999999999068s; LL=-3611.44226101629
R2E:scaled:ica:2; time=0.00899999999998613s; LL=-3428.44776640879
TSP:scaled:ica:2; time=0.00800000000000978s; LL=-3463.49585023274
GW:scaled:ica:2; time=0.0109999999999957s; LL=-3505.6786194137
HC:scaled:ica:2; time=0.00499999999999545s; LL=-3492.69611022839
TSP:unscaled:ica:2; time=0.00900000000001455s; LL=-3375.87980390806
OLO:scaled:ica:2; time=0.00300000000001432s; LL=-3482.08340053878
HC:unscaled:ica:2; time=0.00399999999999068s; LL=-3462.29728164383
R2E:unscaled:ica:2; time=0.00999999999999091s; LL=-3469.49505312534
OLO:unscaled:ica:2; time=0.00300000000001432s; LL=-3380.11590881594
GW:unscaled:ica:2; time=0.00499999999999545s; LL=-3373.42206910165
R2E:scaled:mds:2; time=0.00900000000001455s; LL=-3415.27772859141
TSP:scaled:mds:2; time=0.00799999999998136s; LL=-3398.64499874308
GW:scaled:mds:2; time=0.00499999999999545s; LL=-3500.15837384525
HC:scaled:mds:2; time=0.00399999999999068s; LL=-3496.79857825806
TSP:unscaled:mds:2; time=0.007000000000005s; LL=-3381.90071142186
OLO:scaled:mds:2; time=0.0040000000000191s; LL=-3367.72001685008
HC:unscaled:mds:2; time=0.0040000000000191s; LL=-3523.16354181676
R2E:unscaled:mds:2; time=0.00900000000001455s; LL=-3472.37114643713
OLO:unscaled:mds:2; time=0.0040000000000191s; LL=-3375.39350203929
GW:unscaled:mds:2; time=0.00499999999999545s; LL=-3389.99764061987
R2E:scaled:pca:4; time=0.0100000000000193s; LL=-3547.50597389874
TSP:scaled:pca:4; time=0.00900000000001455s; LL=-3365.23712432155
GW:scaled:pca:4; time=0.00499999999999545s; LL=-3371.60771123424
HC:scaled:pca:4; time=0.0040000000000191s; LL=-3574.84814410554
TSP:unscaled:pca:4; time=0.007000000000005s; LL=-3387.01609836836
OLO:scaled:pca:4; time=0.00399999999999068s; LL=-3360.97475342974
HC:unscaled:pca:4; time=0.00399999999999068s; LL=-3593.80685397055
R2E:unscaled:pca:4; time=0.00900000000001455s; LL=-3499.48468970872
OLO:unscaled:pca:4; time=0.00399999999999068s; LL=-3380.69106870776
GW:unscaled:pca:4; time=0.00399999999999068s; LL=-3382.48940872533
R2E:scaled:kfa:4; time=0.0240000000000009s; LL=-3626.85359874094
TSP:scaled:kfa:4; time=0.0240000000000009s; LL=-3464.3344619182
GW:scaled:kfa:4; time=0.00500000000002387s; LL=-3435.6890130246
HC:scaled:kfa:4; time=0.0040000000000191s; LL=-3595.35093083857
TSP:unscaled:kfa:4; time=0.0229999999999961s; LL=-3547.04098627873
OLO:scaled:kfa:4; time=0.0040000000000191s; LL=-3491.99844056418
HC:unscaled:kfa:4; time=0.0029999999999859s; LL=-3650.71504094729
R2E:unscaled:kfa:4; time=0.0270000000000152s; LL=-3651.14556037566
OLO:unscaled:kfa:4; time=0.0040000000000191s; LL=-3546.18486518008
GW:unscaled:kfa:4; time=0.0040000000000191s; LL=-3519.21268059785
R2E:scaled:ica:4; time=0.0480000000000018s; LL=-3659.97939187247
TSP:scaled:ica:4; time=0.01400000000001s; LL=-3389.37446255766
GW:scaled:ica:4; time=0.00499999999999545s; LL=-3492.61699202061
HC:scaled:ica:4; time=0.00399999999999068s; LL=-3540.37698853791
TSP:unscaled:ica:4; time=0.0159999999999911s; LL=-3423.45276624703
OLO:scaled:ica:4; time=0.0040000000000191s; LL=-3390.84318091296
HC:unscaled:ica:4; time=0.00399999999999068s; LL=-3514.77999885415
R2E:unscaled:ica:4; time=0.0159999999999911s; LL=-3608.49766920109
OLO:unscaled:ica:4; time=0.0040000000000191s; LL=-3421.64736951762
GW:unscaled:ica:4; time=0.0040000000000191s; LL=-3436.39124664996
R2E:scaled:mds:4; time=0.00899999999998613s; LL=-3547.50597389874
GW:scaled:mds:4; time=0.00499999999999545s; LL=-3371.60771123424
TSP:scaled:mds:4; time=0.00900000000001455s; LL=-3359.67181013916
TSP:unscaled:mds:4; time=0.00799999999998136s; LL=-3360.17070398622
HC:scaled:mds:4; time=0.00399999999999068s; LL=-3574.84814410554
OLO:scaled:mds:4; time=0.0029999999999859s; LL=-3360.97475342974
HC:unscaled:mds:4; time=0.0040000000000191s; LL=-3593.80685397055
R2E:unscaled:mds:4; time=0.00900000000001455s; LL=-3499.48468970872
OLO:unscaled:mds:4; time=0.0190000000000055s; LL=-3380.69106870776
GW:unscaled:mds:4; time=0.00499999999999545s; LL=-3382.48940872533
R2E:scaled:pca:8; time=0.00999999999999091s; LL=-3549.41712736848
TSP:scaled:pca:8; time=0.00800000000000978s; LL=-3423.80391965617
GW:scaled:pca:8; time=0.00399999999999068s; LL=-3442.40689863336
HC:scaled:pca:8; time=0.00399999999999068s; LL=-3597.83879734571
TSP:unscaled:pca:8; time=0.00799999999998136s; LL=-3381.06072675749
OLO:scaled:pca:8; time=0.00499999999999545s; LL=-3429.49343022408
HC:unscaled:pca:8; time=0.00399999999999068s; LL=-3587.20956484959
R2E:unscaled:pca:8; time=0.00899999999998613s; LL=-3513.53485470674
OLO:unscaled:pca:8; time=0.0040000000000191s; LL=-3393.42157507642
GW:unscaled:pca:8; time=0.00500000000002387s; LL=-3367.48455147166
R2E:scaled:kfa:8; time=0.0389999999999873s; LL=-3602.59088884096
TSP:scaled:kfa:8; time=0.0319999999999823s; LL=-3459.78522539844
GW:scaled:kfa:8; time=0.00399999999999068s; LL=-3418.23643139119
HC:scaled:kfa:8; time=0.00399999999999068s; LL=-3552.89064901202
OLO:scaled:kfa:8; time=0.0029999999999859s; LL=-3374.13443985951
TSP:unscaled:kfa:8; time=0.0330000000000155s; LL=-3389.77758032802
HC:unscaled:kfa:8; time=0.00399999999999068s; LL=-3491.13810705947
R2E:unscaled:kfa:8; time=0.032999999999987s; LL=-3540.55005771607
OLO:unscaled:kfa:8; time=0.00399999999999068s; LL=-3351.34732227033
GW:unscaled:kfa:8; time=0.0040000000000191s; LL=-3374.62873114048
R2E:scaled:ica:8; time=0.0869999999999891s; LL=-3568.75161775786
TSP:scaled:ica:8; time=0.0879999999999939s; LL=-3497.86494327622
GW:scaled:ica:8; time=0.00399999999999068s; LL=-3568.56181068757
HC:scaled:ica:8; time=0.0040000000000191s; LL=-3589.44142550571
OLO:scaled:ica:8; time=0.00399999999999068s; LL=-3505.96173129521
TSP:unscaled:ica:8; time=0.0939999999999941s; LL=-3483.31171080955
R2E:unscaled:ica:8; time=0.0480000000000018s; LL=-3792.26432897859
HC:unscaled:ica:8; time=0.0200000000000102s; LL=-3620.70989548262
GW:unscaled:ica:8; time=0.00399999999999068s; LL=-3608.69593348849
OLO:unscaled:ica:8; time=0.00399999999999068s; LL=-3524.40137779591
TSP:scaled:mds:8; time=0.0250000000000057s; LL=-3361.40267131146
R2E:scaled:mds:8; time=0.00999999999999091s; LL=-3549.41712736848
GW:scaled:mds:8; time=0.0040000000000191s; LL=-3442.40689863336
HC:scaled:mds:8; time=0.00300000000001432s; LL=-3597.83879734571
TSP:unscaled:mds:8; time=0.00899999999998613s; LL=-3381.06072675749
OLO:scaled:mds:8; time=0.00399999999999068s; LL=-3429.49343022408
HC:unscaled:mds:8; time=0.0040000000000191s; LL=-3587.20956484959
R2E:unscaled:mds:8; time=0.00800000000000978s; LL=-3513.53485470674
OLO:unscaled:mds:8; time=0.0040000000000191s; LL=-3393.42157507642
GW:unscaled:mds:8; time=0.00499999999999545s; LL=-3367.48455147166
Using ordering OLO:unscaled:kfa:8; LL=-3351.34732227033
Using ordering TSP:scaled:none:1; LL=-3357.62749667045
Joining, by = "c"
In file included from file7214c38ef7f.cpp:3:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Dense:1:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Core:531:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file7214c38ef7f.cpp:3:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Dense:2:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/LU:47:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file7214c38ef7f.cpp:3:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Dense:3:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Cholesky:12:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Jacobi:29:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file7214c38ef7f.cpp:3:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Dense:3:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Cholesky:43:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file7214c38ef7f.cpp:3:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Dense:4:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/QR:17:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Householder:27:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file7214c38ef7f.cpp:3:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Dense:5:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/SVD:48:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file7214c38ef7f.cpp:3:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Dense:6:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Geometry:58:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file7214c38ef7f.cpp:3:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Dense:7:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Eigenvalues:58:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file7214c38ef7f.cpp:3:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/SparseCore:66:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file7214c38ef7f.cpp:3:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Sparse:27:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/OrderingMethods:71:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file7214c38ef7f.cpp:3:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/SparseCholesky:43:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file7214c38ef7f.cpp:3:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Sparse:32:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/SparseQR:35:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file7214c38ef7f.cpp:3:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/Sparse:33:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file7214c38ef7f.cpp:3:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigenForward.h:32:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/CholmodSupport:45:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file7214c38ef7f.cpp:3:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigenForward.h:35:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file7214c38ef7f.cpp:3:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigenForward.h:39:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file7214c38ef7f.cpp:3:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/RcppEigenForward.h:40:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file7214c38ef7f.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:309:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/prob/multinomial_rng.hpp:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/binomial_rng.hpp:10:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/random/binomial_distribution.hpp:407:9: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types]
        struct {
        ^
In file included from file7214c38ef7f.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/heterogeneous_system.hpp:34:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file7214c38ef7f.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/dimension.hpp:21:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file7214c38ef7f.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/dimension.hpp:21:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/detail/dimension_list.hpp:131:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file7214c38ef7f.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/detail/linear_algebra.hpp:20:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file7214c38ef7f.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/detail/unscale.hpp:28:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file7214c38ef7f.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/detail/conversion_impl.hpp:20:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file7214c38ef7f.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/detail/conversion_impl.hpp:21:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file7214c38ef7f.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file7214c38ef7f.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:49:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal.hpp:316:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_2_ccdf_log.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_2_lccdf.hpp:11:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_ccdf_log.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_lccdf.hpp:24:
In file included from /tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/random/negative_binomial_distribution.hpp:21:
/tmp/RtmpgDVEDI/RLIBS_13e085bc12d/BH/include/boost/random/poisson_distribution.hpp:338:9: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types]
        struct {
        ^
file7214c38ef7f.cpp:223:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file7214c38ef7f.cpp:224:21: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
cov_symmetric(const row_vector_d& tau,
                    ^~~~~~~~~~~~
                    stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file7214c38ef7f.cpp:272:9: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
        matrix_d
        ^~~~~~~~
        stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file7214c38ef7f.cpp:273:22: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    operator()(const row_vector_d& tau,
                     ^~~~~~~~~~~~
                     stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file7214c38ef7f.cpp:281:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file7214c38ef7f.cpp:282:11: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
cov(const row_vector_d& tau1,
          ^~~~~~~~~~~~
          stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file7214c38ef7f.cpp:283:15: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
        const row_vector_d& tau2,
              ^~~~~~~~~~~~
              stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file7214c38ef7f.cpp:325:9: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
        matrix_d
        ^~~~~~~~
        stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file7214c38ef7f.cpp:326:22: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    operator()(const row_vector_d& tau1,
                     ^~~~~~~~~~~~
                     stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file7214c38ef7f.cpp:327:15: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
        const row_vector_d& tau2,
              ^~~~~~~~~~~~
              stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file7214c38ef7f.cpp:336:30: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
pretty_print_tri_lower(const matrix_d& x) {
                             ^~~~~~~~
                             stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file7214c38ef7f.cpp:386:22: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
    operator()(const matrix_d& x, std::ostream* pstream__ = &Rcpp::Rcout) const {
                     ^~~~~~~~
                     stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file7214c38ef7f.cpp:456:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d cov_symmetric(const row_vector_d& tau, const int& periodic, const double& period, const double& l);
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file7214c38ef7f.cpp:456:30: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
matrix_d cov_symmetric(const row_vector_d& tau, const int& periodic, const double& period, const double& l);
                             ^~~~~~~~~~~~
                             stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file7214c38ef7f.cpp:461:42: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    Rcpp::traits::input_parameter< const row_vector_d& >::type tau(tauSEXP);
                                         ^~~~~~~~~~~~
                                         stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file7214c38ef7f.cpp:470:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d cov(const row_vector_d& tau1, const row_vector_d& tau2, const int& periodic, const double& period, const double& l);
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file7214c38ef7f.cpp:470:20: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
matrix_d cov(const row_vector_d& tau1, const row_vector_d& tau2, const int& periodic, const double& period, const double& l);
                   ^~~~~~~~~~~~
                   stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file7214c38ef7f.cpp:470:46: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
matrix_d cov(const row_vector_d& tau1, const row_vector_d& tau2, const int& periodic, const double& period, const double& l);
                                             ^~~~~~~~~~~~
                                             stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file7214c38ef7f.cpp:475:42: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    Rcpp::traits::input_parameter< const row_vector_d& >::type tau1(tau1SEXP);
                                         ^~~~~~~~~~~~
                                         stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
27 warnings and 20 errors generated.
make[1]: *** [/home/hornik/tmp/R.check/r-devel-clang/Work/build/etc/Makeconf:166: file7214c38ef7f.o] Error 1
Quitting from lines 145-146 (DeLorean.Rmd) 
Here is the C++ code that does not compile. Please report bug.
Error: processing vignette ‘DeLorean.Rmd’ failed with diagnostics:
Error 1 occurred building shared library.
Execution halted