Error in re-building vignettes:
  ...
Loading required package: Rcpp

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Joining, by = "gene"
Joining, by = "cell"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Have 35 cells after filtering
Joining, by = "cell"
Have 20 genes after filtering
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Compiling model
DIAGNOSTIC(S) FROM PARSER:
Info: left-hand side variable (name=result) occurs on right-hand side of assignment, causing inefficient deep copy to avoid aliasing.

the number of chains is less than 1; sampling not done
Saving compiled model to /tmp/RtmpFk2vYb/DeLorean-exact-sizes.rds
TSP:scaled:none:1; time=2.11099999999999s; LL=-3342.1539675728
HC:scaled:none:1; time=0.00399999999999068s; LL=-3549.93669777842
R2E:scaled:none:1; time=2.49299999999999s; LL=-3466.26725107208
OLO:scaled:none:1; time=0.0040000000000191s; LL=-3361.41643733261
R2E:unscaled:none:1; time=0.00800000000000978s; LL=-3333.11894779961
GW:scaled:none:1; time=0.00499999999999545s; LL=-3348.01067539495
GW:unscaled:none:1; time=0.00399999999999068s; LL=-3361.98379013945
TSP:unscaled:none:1; time=0.00900000000001455s; LL=-3356.02175511677
TSP:scaled:pca:1; time=0.00800000000000978s; LL=-3461.61082132518
HC:unscaled:none:1; time=0.0040000000000191s; LL=-3416.70560607613
HC:scaled:pca:1; time=0.00399999999999068s; LL=-3473.14833401267
OLO:unscaled:none:1; time=0.0040000000000191s; LL=-3343.10981518997
OLO:scaled:pca:1; time=0.00399999999999068s; LL=-3423.66344938166
R2E:scaled:pca:1; time=0.00999999999999091s; LL=-3585.34882279147
R2E:unscaled:pca:1; time=0.00799999999998136s; LL=-3476.54310138084
GW:scaled:pca:1; time=0.0040000000000191s; LL=-3423.66344938166
GW:unscaled:pca:1; time=0.00399999999999068s; LL=-3476.54310138084
TSP:unscaled:pca:1; time=0.00699999999997658s; LL=-3478.26740508839
TSP:scaled:ica:1; time=0.0159999999999911s; LL=-3466.93617804214
HC:unscaled:pca:1; time=0.00399999999999068s; LL=-3534.77954376869
HC:scaled:ica:1; time=0.00999999999999091s; LL=-3473.14833401267
OLO:unscaled:pca:1; time=0.00399999999999068s; LL=-3476.54310138084
OLO:scaled:ica:1; time=0.0029999999999859s; LL=-3423.66344938166
R2E:scaled:ica:1; time=0.0169999999999959s; LL=-3585.34882279147
R2E:unscaled:ica:1; time=0.00900000000001455s; LL=-3476.54310138084
GW:scaled:ica:1; time=0.00499999999999545s; LL=-3423.66344938166
GW:unscaled:ica:1; time=0.0040000000000191s; LL=-3476.54310138084
TSP:unscaled:ica:1; time=0.00800000000000978s; LL=-3476.54310138084
TSP:scaled:mds:1; time=0.007000000000005s; LL=-3459.93900559773
HC:unscaled:ica:1; time=0.00499999999999545s; LL=-3534.77954376869
HC:scaled:mds:1; time=0.00399999999999068s; LL=-3473.14833401267
OLO:scaled:mds:1; time=0.00399999999999068s; LL=-3423.66344938166
OLO:unscaled:ica:1; time=0.0040000000000191s; LL=-3476.54310138084
R2E:unscaled:mds:1; time=0.00799999999998136s; LL=-3476.54310138084
R2E:scaled:mds:1; time=0.00900000000001455s; LL=-3585.34882279147
GW:unscaled:mds:1; time=0.0040000000000191s; LL=-3476.54310138084
GW:scaled:mds:1; time=0.00399999999999068s; LL=-3423.66344938166
TSP:scaled:pca:2; time=0.00800000000000978s; LL=-3398.93186615243
TSP:unscaled:mds:1; time=0.00999999999999091s; LL=-3476.54310138084
HC:scaled:pca:2; time=0.00399999999999068s; LL=-3541.40790349861
HC:unscaled:mds:1; time=0.0040000000000191s; LL=-3534.77954376869
OLO:scaled:pca:2; time=0.00399999999999068s; LL=-3375.09745602085
OLO:unscaled:mds:1; time=0.00600000000000023s; LL=-3476.54310138084
R2E:unscaled:pca:2; time=0.0159999999999911s; LL=-3404.44842268938
R2E:scaled:pca:2; time=0.0129999999999768s; LL=-3478.05165497739
GW:unscaled:pca:2; time=0.0040000000000191s; LL=-3403.31240317547
GW:scaled:pca:2; time=0.0040000000000191s; LL=-3518.27017423109
TSP:scaled:kfa:2; time=0.0279999999999916s; LL=-3491.61147166489
TSP:unscaled:pca:2; time=0.00699999999997658s; LL=-3371.30166709977
HC:scaled:kfa:2; time=0.0029999999999859s; LL=-3545.85290062923
HC:unscaled:pca:2; time=0.00399999999999068s; LL=-3420.70404224053
OLO:scaled:kfa:2; time=0.00399999999999068s; LL=-3485.22735882222
OLO:unscaled:pca:2; time=0.00399999999999068s; LL=-3377.94341271423
R2E:unscaled:kfa:2; time=0.0220000000000198s; LL=-3759.6243895054
R2E:scaled:kfa:2; time=0.0289999999999964s; LL=-3526.41889071993
GW:unscaled:kfa:2; time=0.0040000000000191s; LL=-3688.46514804551
GW:scaled:kfa:2; time=0.00499999999999545s; LL=-3445.98059089629
TSP:scaled:ica:2; time=0.0100000000000193s; LL=-3418.32882703789
TSP:unscaled:kfa:2; time=0.021000000000015s; LL=-3511.11105122392
HC:scaled:ica:2; time=0.0040000000000191s; LL=-3512.14505585215
HC:unscaled:kfa:2; time=0.00399999999999068s; LL=-3595.08265619824
OLO:scaled:ica:2; time=0.00399999999999068s; LL=-3384.2618821768
OLO:unscaled:kfa:2; time=0.00399999999999068s; LL=-3512.90953313077
R2E:unscaled:ica:2; time=0.00999999999999091s; LL=-3420.85891201579
R2E:scaled:ica:2; time=0.0109999999999957s; LL=-3439.23739902248
GW:unscaled:ica:2; time=0.00499999999999545s; LL=-3396.74973892857
GW:scaled:ica:2; time=0.0040000000000191s; LL=-3386.80374741519
TSP:scaled:mds:2; time=0.00899999999998613s; LL=-3384.37547256203
TSP:unscaled:ica:2; time=0.00899999999998613s; LL=-3353.71524336581
HC:scaled:mds:2; time=0.00399999999999068s; LL=-3541.40790349861
OLO:scaled:mds:2; time=0.00399999999999068s; LL=-3375.09745602085
HC:unscaled:ica:2; time=0.0040000000000191s; LL=-3434.07920151636
R2E:unscaled:mds:2; time=0.00999999999999091s; LL=-3404.44842268938
OLO:unscaled:ica:2; time=0.0040000000000191s; LL=-3389.90601800753
GW:unscaled:mds:2; time=0.00399999999999068s; LL=-3403.31240317547
R2E:scaled:mds:2; time=0.00899999999998613s; LL=-3478.05165497739
TSP:scaled:pca:4; time=0.00800000000000978s; LL=-3337.49860538777
GW:scaled:mds:2; time=0.00399999999999068s; LL=-3518.27017423109
HC:scaled:pca:4; time=0.00499999999999545s; LL=-3405.03259300632
TSP:unscaled:mds:2; time=0.00800000000000978s; LL=-3355.66166466103
OLO:scaled:pca:4; time=0.00399999999999068s; LL=-3364.14810432398
HC:unscaled:mds:2; time=0.0040000000000191s; LL=-3420.70404224053
R2E:unscaled:pca:4; time=0.00800000000000978s; LL=-3331.6505781888
OLO:unscaled:mds:2; time=0.0040000000000191s; LL=-3377.94341271423
GW:unscaled:pca:4; time=0.00399999999999068s; LL=-3343.66574073555
R2E:scaled:pca:4; time=0.0100000000000193s; LL=-3465.33170219123
TSP:scaled:kfa:4; time=0.0250000000000057s; LL=-3364.4361273714
GW:scaled:pca:4; time=0.00499999999999545s; LL=-3347.42890564083
HC:scaled:kfa:4; time=0.00300000000001432s; LL=-3448.31226253065
TSP:unscaled:pca:4; time=0.00800000000000978s; LL=-3388.77846692634
OLO:scaled:kfa:4; time=0.00399999999999068s; LL=-3379.54595425553
HC:unscaled:pca:4; time=0.0040000000000191s; LL=-3399.4604202653
R2E:unscaled:kfa:4; time=0.0209999999999866s; LL=-3559.9210983531
OLO:unscaled:pca:4; time=0.00399999999999068s; LL=-3326.58564036717
GW:unscaled:kfa:4; time=0.0199999999999818s; LL=-3502.04465392795
R2E:scaled:kfa:4; time=0.0240000000000009s; LL=-3475.52176246138
GW:scaled:kfa:4; time=0.00499999999999545s; LL=-3416.34819629461
TSP:scaled:ica:4; time=0.0109999999999957s; LL=-3394.31936299522
HC:scaled:ica:4; time=0.00399999999999068s; LL=-3395.49925016931
TSP:unscaled:kfa:4; time=0.0240000000000009s; LL=-3381.86013211297
OLO:scaled:ica:4; time=0.00399999999999068s; LL=-3419.89343460441
HC:unscaled:kfa:4; time=0.00399999999999068s; LL=-3484.88727000164
OLO:unscaled:kfa:4; time=0.00499999999999545s; LL=-3405.87938418113
R2E:unscaled:ica:4; time=0.0169999999999959s; LL=-3432.85847955121
GW:unscaled:ica:4; time=0.00499999999999545s; LL=-3457.79204260233
R2E:scaled:ica:4; time=0.0209999999999866s; LL=-3454.42855649173
TSP:scaled:mds:4; time=0.00800000000000978s; LL=-3363.20942987482
GW:scaled:ica:4; time=0.00399999999999068s; LL=-3451.01005696269
HC:scaled:mds:4; time=0.0040000000000191s; LL=-3405.03259300632
TSP:unscaled:ica:4; time=0.0160000000000196s; LL=-3440.0831965275
OLO:scaled:mds:4; time=0.00399999999999068s; LL=-3364.14810432398
HC:unscaled:ica:4; time=0.00300000000001432s; LL=-3483.36133281233
R2E:unscaled:mds:4; time=0.00899999999998613s; LL=-3331.6505781888
OLO:unscaled:ica:4; time=0.00399999999999068s; LL=-3460.38713786947
GW:unscaled:mds:4; time=0.0040000000000191s; LL=-3343.66574073555
R2E:scaled:mds:4; time=0.0100000000000193s; LL=-3465.33170219123
TSP:scaled:pca:8; time=0.00899999999998613s; LL=-3331.55250960129
GW:scaled:mds:4; time=0.00499999999999545s; LL=-3347.42890564083
HC:scaled:pca:8; time=0.00399999999999068s; LL=-3529.67572474262
TSP:unscaled:mds:4; time=0.00800000000000978s; LL=-3340.1187865959
OLO:scaled:pca:8; time=0.00399999999999068s; LL=-3364.05043556332
HC:unscaled:mds:4; time=0.00399999999999068s; LL=-3399.4604202653
OLO:unscaled:mds:4; time=0.00399999999999068s; LL=-3326.58564036717
R2E:unscaled:pca:8; time=0.00900000000001455s; LL=-3332.84204744762
R2E:scaled:pca:8; time=0.0100000000000193s; LL=-3480.03031527298
GW:unscaled:pca:8; time=0.00499999999999545s; LL=-3355.1147915244
GW:scaled:pca:8; time=0.00499999999999545s; LL=-3375.85356050003
TSP:scaled:kfa:8; time=0.0319999999999823s; LL=-3413.29570188985
TSP:unscaled:pca:8; time=0.00799999999998136s; LL=-3374.46087498896
HC:scaled:kfa:8; time=0.00499999999999545s; LL=-3428.9475894285
HC:unscaled:pca:8; time=0.0040000000000191s; LL=-3414.98267512527
OLO:scaled:kfa:8; time=0.00399999999999068s; LL=-3372.34567964181
OLO:unscaled:pca:8; time=0.00399999999999068s; LL=-3340.07778357837
R2E:unscaled:kfa:8; time=0.0330000000000155s; LL=-3484.46432081701
R2E:scaled:kfa:8; time=0.0340000000000202s; LL=-3563.7614747617
GW:unscaled:kfa:8; time=0.00399999999999068s; LL=-3448.59366365187
GW:scaled:kfa:8; time=0.00499999999999545s; LL=-3470.30710286281
TSP:scaled:ica:8; time=0.0249999999999773s; LL=-3552.87244109002
TSP:unscaled:kfa:8; time=0.0319999999999823s; LL=-3443.93076370232
HC:scaled:ica:8; time=0.00399999999999068s; LL=-3623.82108796005
HC:unscaled:kfa:8; time=0.0040000000000191s; LL=-3493.35932081867
OLO:scaled:ica:8; time=0.0040000000000191s; LL=-3616.95417488487
OLO:unscaled:kfa:8; time=0.00399999999999068s; LL=-3434.59247752329
R2E:unscaled:ica:8; time=0.0860000000000127s; LL=-3569.67512880063
R2E:scaled:ica:8; time=0.0889999999999986s; LL=-3669.51253240635
GW:unscaled:ica:8; time=0.00499999999999545s; LL=-3506.93380976975
GW:scaled:ica:8; time=0.00500000000002387s; LL=-3574.7110822726
TSP:scaled:mds:8; time=0.00799999999998136s; LL=-3393.7847950454
TSP:unscaled:ica:8; time=0.135999999999996s; LL=-3572.90436290516
HC:scaled:mds:8; time=0.00399999999999068s; LL=-3529.67572474262
HC:unscaled:ica:8; time=0.00499999999999545s; LL=-3586.94237114395
OLO:scaled:mds:8; time=0.00399999999999068s; LL=-3364.05043556332
OLO:unscaled:ica:8; time=0.00399999999999068s; LL=-3507.53281542269
R2E:unscaled:mds:8; time=0.00800000000000978s; LL=-3332.84204744762
R2E:scaled:mds:8; time=0.00999999999999091s; LL=-3480.03031527298
GW:unscaled:mds:8; time=0.00399999999999068s; LL=-3355.1147915244
GW:scaled:mds:8; time=0.00499999999999545s; LL=-3375.85356050003
TSP:unscaled:mds:8; time=0.007000000000005s; LL=-3346.24358855432
HC:unscaled:mds:8; time=0.0040000000000191s; LL=-3414.98267512527
OLO:unscaled:mds:8; time=0.00399999999999068s; LL=-3340.07778357837
Using ordering OLO:unscaled:pca:4; LL=-3326.58564036717
Using ordering TSP:scaled:pca:8; LL=-3331.55250960129
Joining, by = "c"
In file included from file43938f4ab2b.cpp:3:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Dense:1:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Core:531:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file43938f4ab2b.cpp:3:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Dense:2:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/LU:47:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file43938f4ab2b.cpp:3:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Dense:3:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Cholesky:12:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Jacobi:29:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file43938f4ab2b.cpp:3:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Dense:3:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Cholesky:43:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file43938f4ab2b.cpp:3:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Dense:4:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/QR:17:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Householder:27:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file43938f4ab2b.cpp:3:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Dense:5:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/SVD:48:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file43938f4ab2b.cpp:3:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Dense:6:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Geometry:58:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file43938f4ab2b.cpp:3:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Dense:7:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Eigenvalues:58:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file43938f4ab2b.cpp:3:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/SparseCore:66:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file43938f4ab2b.cpp:3:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Sparse:27:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/OrderingMethods:71:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file43938f4ab2b.cpp:3:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/SparseCholesky:43:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file43938f4ab2b.cpp:3:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Sparse:32:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/SparseQR:35:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file43938f4ab2b.cpp:3:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/Sparse:33:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file43938f4ab2b.cpp:3:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigenForward.h:32:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/CholmodSupport:45:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file43938f4ab2b.cpp:3:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigenForward.h:35:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file43938f4ab2b.cpp:3:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigenForward.h:39:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file43938f4ab2b.cpp:3:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/RcppEigenForward.h:40:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file43938f4ab2b.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:309:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/prob/multinomial_rng.hpp:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/binomial_rng.hpp:10:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/random/binomial_distribution.hpp:407:9: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types]
        struct {
        ^
In file included from file43938f4ab2b.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/heterogeneous_system.hpp:34:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file43938f4ab2b.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/dimension.hpp:21:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file43938f4ab2b.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/dimension.hpp:21:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/detail/dimension_list.hpp:131:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file43938f4ab2b.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/detail/linear_algebra.hpp:20:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file43938f4ab2b.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/detail/unscale.hpp:28:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file43938f4ab2b.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/detail/conversion_impl.hpp:20:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file43938f4ab2b.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/detail/conversion_impl.hpp:21:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file43938f4ab2b.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file43938f4ab2b.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:49:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal.hpp:316:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_2_ccdf_log.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_2_lccdf.hpp:11:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_ccdf_log.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_lccdf.hpp:24:
In file included from /tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/random/negative_binomial_distribution.hpp:21:
/tmp/Rtmpgd1K67/RLIBS_25926bee4c24/BH/include/boost/random/poisson_distribution.hpp:338:9: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types]
        struct {
        ^
file43938f4ab2b.cpp:223:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file43938f4ab2b.cpp:224:21: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
cov_symmetric(const row_vector_d& tau,
                    ^~~~~~~~~~~~
                    stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file43938f4ab2b.cpp:272:9: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
        matrix_d
        ^~~~~~~~
        stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file43938f4ab2b.cpp:273:22: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    operator()(const row_vector_d& tau,
                     ^~~~~~~~~~~~
                     stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file43938f4ab2b.cpp:281:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file43938f4ab2b.cpp:282:11: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
cov(const row_vector_d& tau1,
          ^~~~~~~~~~~~
          stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file43938f4ab2b.cpp:283:15: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
        const row_vector_d& tau2,
              ^~~~~~~~~~~~
              stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file43938f4ab2b.cpp:325:9: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
        matrix_d
        ^~~~~~~~
        stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file43938f4ab2b.cpp:326:22: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    operator()(const row_vector_d& tau1,
                     ^~~~~~~~~~~~
                     stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file43938f4ab2b.cpp:327:15: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
        const row_vector_d& tau2,
              ^~~~~~~~~~~~
              stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file43938f4ab2b.cpp:336:30: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
pretty_print_tri_lower(const matrix_d& x) {
                             ^~~~~~~~
                             stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file43938f4ab2b.cpp:386:22: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
    operator()(const matrix_d& x, std::ostream* pstream__ = &Rcpp::Rcout) const {
                     ^~~~~~~~
                     stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file43938f4ab2b.cpp:456:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d cov_symmetric(const row_vector_d& tau, const int& periodic, const double& period, const double& l);
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file43938f4ab2b.cpp:456:30: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
matrix_d cov_symmetric(const row_vector_d& tau, const int& periodic, const double& period, const double& l);
                             ^~~~~~~~~~~~
                             stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file43938f4ab2b.cpp:461:42: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    Rcpp::traits::input_parameter< const row_vector_d& >::type tau(tauSEXP);
                                         ^~~~~~~~~~~~
                                         stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file43938f4ab2b.cpp:470:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d cov(const row_vector_d& tau1, const row_vector_d& tau2, const int& periodic, const double& period, const double& l);
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file43938f4ab2b.cpp:470:20: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
matrix_d cov(const row_vector_d& tau1, const row_vector_d& tau2, const int& periodic, const double& period, const double& l);
                   ^~~~~~~~~~~~
                   stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file43938f4ab2b.cpp:470:46: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
matrix_d cov(const row_vector_d& tau1, const row_vector_d& tau2, const int& periodic, const double& period, const double& l);
                                             ^~~~~~~~~~~~
                                             stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file43938f4ab2b.cpp:475:42: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    Rcpp::traits::input_parameter< const row_vector_d& >::type tau1(tau1SEXP);
                                         ^~~~~~~~~~~~
                                         stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
27 warnings and 20 errors generated.
make[1]: *** [/home/hornik/tmp/R.check/r-devel-clang/Work/build/etc/Makeconf:166: file43938f4ab2b.o] Error 1
Quitting from lines 145-146 (DeLorean.Rmd) 
Here is the C++ code that does not compile. Please report bug.
Error: processing vignette ‘DeLorean.Rmd’ failed with diagnostics:
Error 1 occurred building shared library.
Execution halted